Variant report

Variant	rs189970097
Chromosome Location	chr11:18099893-18099894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18097348..18100166-chr11:18112534..18115316,2	MCF-7	breast:
2	chr11:18096008..18098167-chr11:18099695..18101837,4	K562	blood:

Variant related genes	Relation type
ENSG00000166788	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553591	chr11:18090519-18100022	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv553593	chr11:18095815-18100022	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv553594	chr11:18095815-18100799	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv553597	chr11:18097481-18100022	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3479263	chr11:18097510-18100502	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3479274	chr11:18097510-18100502	Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv16818	chr11:18097605-18100066	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv553603	chr11:18098635-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv553604	chr11:18098635-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv553605	chr11:18098635-18102232	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv553606	chr11:18098635-18105302	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv553610	chr11:18098688-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv553611	chr11:18098688-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv553612	chr11:18098688-18102232	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv553616	chr11:18098785-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv553617	chr11:18098785-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv553618	chr11:18098785-18102232	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv553621	chr11:18098837-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv553624	chr11:18098932-18099968	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv553625	chr11:18098932-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv553626	chr11:18098932-18102232	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv553627	chr11:18098983-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv553628	chr11:18098983-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv553629	chr11:18098983-18102232	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv553630	chr11:18099157-18099968	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv553631	chr11:18099157-18100022	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv553632	chr11:18099211-18100022	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:18081400-18100400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:18083200-18109000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:18083400-18102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:18084800-18108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:18085200-18104200	Weak transcription	Fetal Intestine Small	intestine
7	chr11:18085200-18113000	Weak transcription	Fetal Brain Male	brain
8	chr11:18085600-18101000	Weak transcription	Thymus	Thymus
9	chr11:18085600-18102000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:18085800-18100600	Weak transcription	Fetal Kidney	kidney
11	chr11:18085800-18109600	Weak transcription	Spleen	Spleen
12	chr11:18086000-18100000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:18086000-18101000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:18086000-18105600	Weak transcription	Right Ventricle	heart
15	chr11:18086200-18100600	Weak transcription	Brain Anterior Caudate	brain
16	chr11:18086400-18107600	Weak transcription	Lung	lung
17	chr11:18086600-18100600	Weak transcription	Liver	Liver
18	chr11:18087400-18100600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:18087400-18109800	Weak transcription	Gastric	stomach
20	chr11:18087400-18115800	Weak transcription	Pancreas	Pancrea
21	chr11:18087600-18100400	Weak transcription	HMEC	breast
22	chr11:18087600-18102400	Weak transcription	Brain Germinal Matrix	brain
23	chr11:18087600-18105200	Weak transcription	NHEK	skin
24	chr11:18087800-18100400	Weak transcription	Fetal Brain Female	brain
25	chr11:18087800-18100800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:18088200-18100800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:18088600-18100400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:18088800-18101200	Weak transcription	Ovary	ovary
29	chr11:18089200-18102400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:18089600-18100800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:18089600-18101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:18089600-18102600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:18089800-18100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:18090000-18100600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:18090200-18107600	Weak transcription	Aorta	Aorta
36	chr11:18090400-18100600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:18090600-18100800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:18090800-18100600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:18090800-18101600	Weak transcription	GM12878-XiMat	blood
40	chr11:18091000-18100600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:18091400-18100600	Weak transcription	Primary T cells from cord blood	blood
42	chr11:18091600-18101000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:18091600-18101000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:18092200-18107200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:18092600-18102000	Weak transcription	Fetal Lung	lung
46	chr11:18092600-18102800	Weak transcription	NHLF	lung
47	chr11:18092800-18105800	Weak transcription	Left Ventricle	heart
48	chr11:18092800-18109400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:18093000-18101800	Weak transcription	NH-A	brain
50	chr11:18093200-18106000	Weak transcription	Fetal Stomach	stomach

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