Variant report

Variant	rs190078336
Chromosome Location	chr11:56345354-56345355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56345354-56345404	HAEpiC	amniotic membrane:	n/a
2	chr11:56345354-56345404	HRCEpiC	kidney:	n/a
3	chr11:56345354-56345404	RPTEC	kidney:	n/a
4	chr11:56345354-56345404	GM12892	blood:	n/a
5	chr11:56345354-56345404	AG09319	gingival:	n/a
6	chr11:56345354-56345404	NH-A	brain:	n/a
7	chr11:56345354-56345404	HepG2	liver:	n/a
8	chr11:56345354-56345404	U87	brain:	n/a
9	chr11:56345354-56345404	MCF-7	breast:	n/a
10	chr11:56345354-56345404	HL-60	blood:	n/a
11	chr11:56345354-56345404	SKMC	muscle:	n/a
12	chr11:56345354-56345404	AoSMC	blood vessel:	n/a
13	chr11:56345354-56345404	K562	blood:	n/a
14	chr11:56345354-56345404	SK-N-SH	brain:	n/a
15	chr11:56345354-56345404	NB4	blood:	n/a
16	chr11:56345354-56345404	NHBE	bronchial:	n/a
17	chr11:56345354-56345404	LNCaP	prostate:	n/a
18	chr11:56345354-56345404	GM12878	blood:	n/a
19	chr11:56345354-56345404	NHDF-neo	bronchial:	n/a
20	chr11:56345354-56345404	IMR90	lung:	fetal
21	chr11:56345354-56345404	AG10803	skin:	n/a
22	chr11:56345354-56345404	HCT-116	colon:	n/a
23	chr11:56345354-56345404	H1-hESC	embryonic stem cell:	embryo
24	chr11:56345354-56345404	CMK	blood:	n/a
25	chr11:56345354-56345404	SK-N-SH_RA	brain:	n/a
26	chr11:56345354-56345404	BJ	skin:	n/a
27	chr11:56345354-56345404	ProgFib	skin:	n/a
28	chr11:56345354-56345404	HCPEpiC	choroid plexus:	n/a
29	chr11:56345354-56345404	HPAEpiC	pulmonary alveolar:	n/a
30	chr11:56345354-56345404	GM12891	blood:	n/a
31	chr11:56345354-56345404	GM06990	blood:	n/a
32	chr11:56345354-56345404	T-47D	breast:	n/a
33	chr11:56345354-56345404	HEEpiC	esophagus:	n/a
34	chr11:56345354-56345404	PANC-1	pancreas:	n/a
35	chr11:56345354-56345404	NT2-D1	testis:	n/a
36	chr11:56345354-56345404	HUVEC	blood vessel:	n/a
37	chr11:56345354-56345404	Hela-S3	cervix:	n/a
38	chr11:56345354-56345404	Jurkat	blood:	n/a
39	chr11:56345354-56345404	AG04450	lung:	fetal
40	chr11:56345354-56345404	HNPCEpiC	eye:	n/a
41	chr11:56345354-56345404	Caco-2	colon:	n/a
42	chr11:56345354-56345404	PFSK-1	brain:	n/a
43	chr11:56345354-56345404	Hepatocyte	liver:	n/a
44	chr11:56345354-56345404	GM19239	blood:	n/a
45	chr11:56345354-56345404	HRPEpiC	eye:	n/a
46	chr11:56345354-56345404	AG09309	skin:	n/a
47	chr11:56345354-56345404	BE2_C	brain:	n/a
48	chr11:56345354-56345404	MCF10A-Er-Src	breast:	n/a
49	chr11:56345354-56345404	ECC-1	luminal epithelium:	n/a
50	chr11:56345354-56345404	SK-N-MC	brain:	n/a

No data

Variant related genes	Relation type
OR5M10	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv516558	chr11:56315297-56347636	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
6	esv2421725	chr11:56323407-56354044	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv523453	chr11:56324576-56366677	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	nsv525637	chr11:56330546-56366677	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	nsv1037096	chr11:56332750-56380919	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2760201	chr11:56332762-56368515	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
11	esv3384407	chr11:56344917-56380827	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
12	esv3398628	chr11:56344934-56380760	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv971951	chr11:56345170-56361311	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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