Variant report

Variant	rs1902061
Chromosome Location	chr2:55651886-55651887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55646192..55651046-chr2:55651862..55657167,5	K562	blood:
2	chr2:55651546..55653549-chr2:55657687..55659327,2	K562	blood:

Variant related genes	Relation type
ENSG00000115355	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10169185	0.85[CEU][hapmap]
rs11125568	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11125569	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11125572	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12617891	0.82[CEU][hapmap]
rs12618216	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12623954	0.90[ASN][1000 genomes]
rs12713297	0.89[ASN][1000 genomes]
rs1454415	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1454419	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1454420	0.90[ASN][1000 genomes]
rs1454423	0.90[ASN][1000 genomes]
rs1454424	0.90[ASN][1000 genomes]
rs1545554	0.82[CEU][hapmap]
rs1598163	0.85[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs1902057	0.82[CEU][hapmap]
rs1902062	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2045132	0.82[CEU][hapmap]
rs2045134	0.86[ASN][1000 genomes]
rs2045135	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2045136	0.81[ASN][1000 genomes]
rs2123983	0.82[CEU][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs2576703	0.82[CEU][hapmap]
rs2589070	0.82[CEU][hapmap]
rs2864831	0.82[CEU][hapmap]
rs2867178	0.82[CEU][hapmap]
rs2867194	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2902857	0.82[CEU][hapmap]
rs2903514	0.88[ASN][1000 genomes]
rs2917777	0.82[CEU][hapmap]
rs2920970	0.82[CEU][hapmap]
rs2966466	1.00[CEU][hapmap]
rs3099081	0.82[CEU][hapmap]
rs3099083	0.82[CEU][hapmap]
rs3748943	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs3762511	0.90[ASN][1000 genomes]
rs4233960	0.82[CEU][hapmap]
rs4233961	0.82[CEU][hapmap]
rs4277563	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4352263	0.91[AMR][1000 genomes]
rs4481025	0.82[CEU][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs4672034	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4672035	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4672036	0.82[CEU][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4672037	0.82[CEU][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4672038	0.82[CEU][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs4672040	1.00[CEU][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4672041	0.90[ASN][1000 genomes]
rs4672043	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4672044	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4672045	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs56225989	0.91[AMR][1000 genomes]
rs6545490	0.82[CEU][hapmap]
rs6545491	0.82[CEU][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6545492	1.00[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6709204	0.82[CEU][hapmap]
rs6720698	1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6721593	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6725968	0.82[CEU][hapmap]
rs6732633	0.81[ASN][1000 genomes]
rs6732759	0.89[ASN][1000 genomes]
rs6733814	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6744426	0.96[ASN][1000 genomes]
rs6748979	0.90[ASN][1000 genomes]
rs7424286	0.84[ASN][1000 genomes]
rs7559987	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7574743	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7579037	1.00[CEU][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7586440	0.82[CEU][hapmap]
rs7589279	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7601340	0.85[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes]
rs7601588	0.82[CEU][hapmap]
rs7602189	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7603105	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7606361	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55647800-55652400	Weak transcription	Stomach Mucosa	stomach
2	chr2:55648000-55652200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:55648000-55652200	Weak transcription	HUVEC	blood vessel
4	chr2:55648000-55652200	Weak transcription	NH-A	brain
5	chr2:55648000-55652400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:55648000-55652400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:55648000-55652400	Weak transcription	HSMM	muscle
8	chr2:55648000-55653400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:55648000-55659000	Weak transcription	Adipose Nuclei	Adipose
10	chr2:55648200-55652200	Weak transcription	Osteobl	bone
11	chr2:55648400-55652400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:55648400-55652400	Enhancers	A549	lung
13	chr2:55648400-55652400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr2:55649400-55652200	Enhancers	Hela-S3	cervix
15	chr2:55649600-55653000	Enhancers	HepG2	liver
16	chr2:55650000-55652400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:55650000-55653400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:55650000-55659000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:55650200-55652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:55650400-55652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:55651000-55652400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr2:55651000-55653400	Enhancers	HMEC	breast
23	chr2:55651200-55653400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:55651200-55653400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr2:55651600-55652000	Weak transcription	NHDF-Ad	bronchial
26	chr2:55651600-55652000	Weak transcription	NHLF	lung
27	chr2:55651600-55653400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:55651600-55653400	Enhancers	NHEK	skin
29	chr2:55651800-55652200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:55651800-55652200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:55651800-55652200	Weak transcription	K562	blood
32	chr2:55651800-55653200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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