Variant report

Variant	rs190401900
Chromosome Location	chr14:31435814-31435815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr14:31435533-31437063	HepG2	liver:	n/a	n/a
2	STAT3	chr14:31435791-31435981	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr14:31435634-31436002	MCF10A-Er-Src	breast:	n/a	n/a
4	USF1	chr14:31435144-31435863	HCT-116	colon:	n/a	n/a
5	ATF1	chr14:31435799-31435996	K562	blood:	n/a	n/a
6	TEAD4	chr14:31435639-31436095	K562	blood:	n/a	n/a
7	FOS	chr14:31435663-31435984	MCF10A-Er-Src	breast:	n/a	n/a
8	JUND	chr14:31435725-31435928	K562	blood:	n/a	n/a
9	BHLHE40	chr14:31435723-31435999	K562	blood:	n/a	n/a
10	STAT3	chr14:31435682-31435882	MCF10A-Er-Src	breast:	n/a	n/a
11	KAP1	chr14:31435415-31435848	HEK293	kidney:	n/a	n/a
12	MYC	chr14:31435737-31435982	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr14:31435506-31436256	HCT-116	colon:	n/a	n/a
14	SETDB1	chr14:31435248-31436013	U2OS	brain:	n/a	n/a
15	FOS	chr14:31435662-31435996	MCF10A-Er-Src	breast:	n/a	n/a
16	RCOR1	chr14:31435716-31435902	K562	blood:	n/a	n/a
17	UBTF	chr14:31435727-31435993	K562	blood:	n/a	n/a
18	POLR2A	chr14:31435551-31436164	HCT-116	colon:	n/a	n/a
19	FOS	chr14:31435022-31436004	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31428811..31431049-chr14:31434848..31436931,2	MCF-7	breast:

Variant related genes	Relation type
STRN3	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1231	chr14:31424602-31444721	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv3429977	chr14:31435166-31441360	Weak transcription ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31378000-31439000	Weak transcription	Psoas Muscle	Psoas
2	chr14:31415000-31437200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:31420200-31464400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:31425600-31437000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:31425600-31442800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:31425600-31443000	Weak transcription	HUVEC	blood vessel
7	chr14:31433000-31437200	ZNF genes & repeats	Fetal Stomach	stomach
8	chr14:31433200-31436400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr14:31433200-31436600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:31433200-31436800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr14:31433200-31436800	ZNF genes & repeats	Fetal Intestine Large	intestine
12	chr14:31433200-31437200	ZNF genes & repeats	Fetal Muscle Leg	muscle
13	chr14:31433200-31437400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:31433200-31437400	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr14:31433400-31436200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr14:31433600-31436200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:31433600-31436200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:31433600-31436200	ZNF genes & repeats	Fetal Brain Female	brain
19	chr14:31433600-31436400	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr14:31433600-31436400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr14:31433600-31436400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr14:31433600-31436400	ZNF genes & repeats	Fetal Lung	lung
23	chr14:31433600-31437000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr14:31434000-31436600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
25	chr14:31434200-31436000	Genic enhancers	HepG2	liver
26	chr14:31434400-31436400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr14:31434400-31436400	Enhancers	HMEC	breast
28	chr14:31434400-31437200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
29	chr14:31434600-31436400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:31434600-31439200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:31434800-31436600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr14:31435000-31436200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr14:31435000-31436800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:31435200-31436000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
35	chr14:31435200-31436000	ZNF genes & repeats	Colon Smooth Muscle	Colon
36	chr14:31435200-31436200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
37	chr14:31435200-31436200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr14:31435200-31436200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
39	chr14:31435200-31436200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
40	chr14:31435200-31436200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:31435200-31436200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:31435200-31436200	ZNF genes & repeats	Aorta	Aorta
43	chr14:31435200-31436200	ZNF genes & repeats	Brain Hippocampus Middle	brain
44	chr14:31435200-31436200	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr14:31435200-31436200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
46	chr14:31435200-31436200	ZNF genes & repeats	Left Ventricle	heart
47	chr14:31435200-31436200	ZNF genes & repeats	Ovary	ovary
48	chr14:31435200-31436200	ZNF genes & repeats	Pancreas	Pancrea
49	chr14:31435200-31436400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
50	chr14:31435200-31436400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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