Variant report

Variant	rs1904675
Chromosome Location	chr10:52930977-52930978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52928917..52931370-chr10:52940832..52942855,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs74131777	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9414848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9414854	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9414862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9415746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9415757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9415767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
3	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:52927200-52931400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:52929000-52932600	Enhancers	NHDF-Ad	bronchial
6	chr10:52929400-52931400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:52929400-52931600	Enhancers	NHLF	lung
8	chr10:52929600-52931400	Enhancers	HSMMtube	muscle
9	chr10:52929600-52931600	Enhancers	Hela-S3	cervix
10	chr10:52929600-52931800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:52929600-52932600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:52929800-52944600	Weak transcription	Left Ventricle	heart
13	chr10:52930000-52931400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:52930000-52932200	Enhancers	Osteobl	bone
15	chr10:52930200-52931000	Enhancers	HSMM	muscle
16	chr10:52930200-52931600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:52930400-52931200	Weak transcription	Psoas Muscle	Psoas
18	chr10:52930400-52931200	Weak transcription	Right Atrium	heart
19	chr10:52930400-52934200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:52930800-52931000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr10:52930800-52931600	Enhancers	Colon Smooth Muscle	Colon
22	chr10:52930800-52932400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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