Variant report

Variant	rs1904689
Chromosome Location	chr10:52927445-52927446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10995918	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10996069	0.88[AFR][1000 genomes]
rs1871630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1904676	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904677	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904683	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1904687	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1904688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904692	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904693	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904695	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1904696	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1904697	0.83[ASN][1000 genomes]
rs2339731	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2339732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851088	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862576	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862579	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3998228	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4505006	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479991	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068022	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085697	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7893773	0.97[ASN][1000 genomes]
rs9414844	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9415733	0.95[ASN][1000 genomes]
rs9633538	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:52908400-52929600	Weak transcription	Aorta	Aorta
4	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
5	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:52917400-52929000	Weak transcription	NHDF-Ad	bronchial
7	chr10:52922200-52927800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:52922400-52927800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:52922800-52930800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:52923000-52928400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:52923000-52928400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:52923600-52928400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:52927200-52931400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:52927400-52928800	Enhancers	Cortex derived primary cultured neurospheres	brain

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