Variant report

Variant	rs1904699
Chromosome Location	chr10:52909710-52909711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1904696	0.80[JPT][hapmap]
rs1904697	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1904698	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9633538	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52895200-52924000	Weak transcription	Fetal Stomach	stomach
2	chr10:52895600-52916600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:52898000-52919600	Weak transcription	NHLF	lung
4	chr10:52901000-52915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:52905600-52912000	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:52907200-52916800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:52908400-52912800	Weak transcription	Psoas Muscle	Psoas
10	chr10:52908400-52916800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:52908400-52929600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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