Variant report

Variant	rs1905055
Chromosome Location	chr11:56113516-56113517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10791952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10791961	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10896163	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10896227	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896290	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs10896325	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10896345	0.95[ASN][1000 genomes]
rs11227964	0.95[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12272403	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12277883	0.95[ASN][1000 genomes]
rs12285921	0.92[ASN][1000 genomes]
rs12291978	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12786642	0.89[ASN][1000 genomes]
rs1351533	0.90[YRI][hapmap]
rs1573512	0.95[ASN][1000 genomes]
rs1945228	0.95[ASN][1000 genomes]
rs2128132	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2128139	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2128140	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2170442	0.92[EUR][1000 genomes]
rs2220001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34434887	0.95[ASN][1000 genomes]
rs4420287	0.95[ASN][1000 genomes]
rs4938829	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs4939033	0.91[ASN][1000 genomes]
rs4939037	0.95[ASN][1000 genomes]
rs4939046	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4939054	0.89[ASN][1000 genomes]
rs594113	0.93[ASN][1000 genomes]
rs594568	0.91[ASN][1000 genomes]
rs597016	0.86[ASN][1000 genomes]
rs597031	0.83[ASN][1000 genomes]
rs597045	0.86[ASN][1000 genomes]
rs597102	0.93[ASN][1000 genomes]
rs605734	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs610822	0.93[ASN][1000 genomes]
rs611459	0.81[CHB][hapmap]
rs612885	0.93[ASN][1000 genomes]
rs615231	0.93[ASN][1000 genomes]
rs621826	0.93[ASN][1000 genomes]
rs624412	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs634955	0.91[ASN][1000 genomes]
rs637202	0.93[ASN][1000 genomes]
rs639419	0.86[ASN][1000 genomes]
rs647027	0.93[ASN][1000 genomes]
rs647058	0.93[ASN][1000 genomes]
rs647402	0.91[ASN][1000 genomes]
rs652537	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs6591233	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591310	0.95[ASN][1000 genomes]
rs660788	0.93[ASN][1000 genomes]
rs663964	0.91[ASN][1000 genomes]
rs669453	0.92[ASN][1000 genomes]
rs672711	0.93[ASN][1000 genomes]
rs675120	0.93[ASN][1000 genomes]
rs675991	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs680490	0.91[ASN][1000 genomes]
rs683539	0.93[ASN][1000 genomes]
rs7105808	0.95[ASN][1000 genomes]
rs7116573	0.95[ASN][1000 genomes]
rs7126732	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7131637	0.93[ASN][1000 genomes]
rs7930678	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7931261	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7933772	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7940239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871301	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1905055	DTX4	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links