Variant report

Variant	rs1905593
Chromosome Location	chr6:64348441-64348442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64282113..64284496-chr6:64347940..64351410,3	MCF-7	breast:
2	chr6:64280920..64286126-chr6:64341540..64349518,16	K562	blood:
3	chr6:64347568..64349664-chr6:64406239..64409987,3	K562	blood:
4	chr6:64345547..64349156-chr6:64414533..64419389,4	K562	blood:
5	chr6:64347337..64350491-chr6:64374830..64379357,4	K562	blood:
6	chr6:64281350..64286126-chr6:64342580..64350015,13	K562	blood:
7	chr6:64347461..64349165-chr6:64396342..64398673,2	K562	blood:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11753940	0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11754041	0.83[ASN][1000 genomes]
rs11755458	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11755460	0.87[ASN][1000 genomes]
rs11756799	0.91[ASN][1000 genomes]
rs11756833	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11757713	0.86[ASN][1000 genomes]
rs11757834	0.85[ASN][1000 genomes]
rs11758365	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11758738	0.91[ASN][1000 genomes]
rs1197983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1333096	0.81[ASN][1000 genomes]
rs1333097	0.81[ASN][1000 genomes]
rs1572115	0.83[ASN][1000 genomes]
rs1681939	1.00[CEU][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16894562	0.85[ASN][1000 genomes]
rs2008452	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295184	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs34254442	0.85[ASN][1000 genomes]
rs3757350	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3778647	0.89[ASN][1000 genomes]
rs3778648	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800491	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800492	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800493	0.86[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823446	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41271589	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4142625	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55678650	0.80[ASN][1000 genomes]
rs55802833	0.80[ASN][1000 genomes]
rs56300303	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56302757	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56360535	0.83[ASN][1000 genomes]
rs57217151	0.86[ASN][1000 genomes]
rs57280061	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57305989	0.85[ASN][1000 genomes]
rs57888259	0.85[ASN][1000 genomes]
rs58198138	0.85[ASN][1000 genomes]
rs58247688	0.87[ASN][1000 genomes]
rs58531869	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60289981	0.82[ASN][1000 genomes]
rs61079290	0.81[ASN][1000 genomes]
rs61094361	0.87[ASN][1000 genomes]
rs61268055	0.85[ASN][1000 genomes]
rs61369019	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61606312	0.87[ASN][1000 genomes]
rs66462731	0.85[ASN][1000 genomes]
rs66481681	0.87[ASN][1000 genomes]
rs66514362	0.80[ASN][1000 genomes]
rs66520187	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66589841	0.87[ASN][1000 genomes]
rs66752943	0.87[ASN][1000 genomes]
rs66804407	0.87[ASN][1000 genomes]
rs66882701	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66973400	0.87[ASN][1000 genomes]
rs67044231	0.87[ASN][1000 genomes]
rs67050101	0.81[ASN][1000 genomes]
rs67069403	0.87[ASN][1000 genomes]
rs67169857	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67342772	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67362704	0.87[ASN][1000 genomes]
rs67632239	0.87[ASN][1000 genomes]
rs67632720	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67674014	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67722441	0.87[ASN][1000 genomes]
rs67725686	0.83[ASN][1000 genomes]
rs67727731	0.81[ASN][1000 genomes]
rs67733371	0.83[ASN][1000 genomes]
rs67856629	0.81[ASN][1000 genomes]
rs67890600	0.87[ASN][1000 genomes]
rs67904296	0.80[ASN][1000 genomes]
rs67935772	0.87[ASN][1000 genomes]
rs67939679	0.85[ASN][1000 genomes]
rs67958548	0.85[ASN][1000 genomes]
rs67959580	0.87[ASN][1000 genomes]
rs68128834	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68132675	0.87[ASN][1000 genomes]
rs68177305	0.87[ASN][1000 genomes]
rs6911092	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6928683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6933866	0.85[ASN][1000 genomes]
rs72884634	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72884640	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72886339	0.87[ASN][1000 genomes]
rs72886350	0.87[ASN][1000 genomes]
rs7758431	0.87[ASN][1000 genomes]
rs958324	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64345200-64348600	Active TSS	GM12878-XiMat	blood
2	chr6:64345400-64349400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:64346400-64349000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:64347000-64349600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:64347000-64349600	Weak transcription	Small Intestine	intestine
6	chr6:64347000-64351000	Weak transcription	Pancreas	Pancrea
7	chr6:64347000-64354800	Weak transcription	Lung	lung
8	chr6:64347000-64370600	Weak transcription	Left Ventricle	heart
9	chr6:64347000-64383200	Weak transcription	Esophagus	oesophagus
10	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:64347200-64348600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:64347200-64348600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:64347200-64348800	Weak transcription	Stomach Mucosa	stomach
14	chr6:64347200-64349000	Flanking Active TSS	Dnd41	blood
15	chr6:64347200-64353200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:64347200-64356400	Weak transcription	Aorta	Aorta
17	chr6:64347400-64348800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:64347400-64349000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr6:64347400-64350800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:64347400-64350800	Weak transcription	Psoas Muscle	Psoas
21	chr6:64347400-64350800	Weak transcription	Right Ventricle	heart
22	chr6:64347400-64351200	Enhancers	Adipose Nuclei	Adipose
23	chr6:64347400-64351200	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:64347400-64351400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:64347400-64352400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:64347400-64355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:64347400-64357000	Weak transcription	Placenta	Placenta
28	chr6:64347400-64358400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:64347400-64359600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:64347400-64370800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:64347600-64348600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:64347600-64348800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:64347600-64350600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:64347600-64350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:64347600-64365200	Weak transcription	Fetal Stomach	stomach
36	chr6:64347600-64381000	Weak transcription	Fetal Thymus	thymus
37	chr6:64347800-64348600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:64347800-64348800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:64347800-64348800	Flanking Active TSS	A549	lung
40	chr6:64347800-64349000	Enhancers	Brain Cingulate Gyrus	brain
41	chr6:64347800-64349400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:64347800-64349600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:64347800-64349600	Weak transcription	Ovary	ovary
44	chr6:64347800-64349600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:64347800-64349600	Weak transcription	HSMMtube	muscle
46	chr6:64347800-64349600	Weak transcription	NH-A	brain
47	chr6:64347800-64349600	Enhancers	NHDF-Ad	bronchial
48	chr6:64347800-64349800	Weak transcription	Thymus	Thymus
49	chr6:64347800-64350600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:64347800-64351000	Enhancers	Fetal Intestine Small	intestine

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