Variant report

Variant	rs1905595
Chromosome Location	chr6:64344423-64344424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr6:64343648-64346957	K562	blood:	n/a	chr6:64346767-64346776 chr6:64343826-64343838
2	FOXA1	chr6:64344419-64344923	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:64344409..64347843-chr6:64354565..64357497,3	MCF-7	breast:
2	chr6:64280920..64286126-chr6:64341540..64349518,16	K562	blood:
3	chr6:64281350..64286126-chr6:64342580..64350015,13	K562	blood:
4	chr6:64342956..64345273-chr6:64406790..64408564,2	K562	blood:

Variant related genes	Relation type
PHF3	TF binding region
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1062193	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755111	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11756680	0.87[ASN][1000 genomes]
rs11757655	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11759362	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1197892	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1210839	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1681953	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1681967	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16879705	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16894454	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16894460	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16894480	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16894493	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1744156	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1744163	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1872288	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923521	0.87[ASN][1000 genomes]
rs1923522	0.87[ASN][1000 genomes]
rs2075656	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2622310	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2622313	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28396397	0.87[ASN][1000 genomes]
rs28635226	0.87[ASN][1000 genomes]
rs2881842	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35468218	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35811627	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800494	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3857527	0.86[ASN][1000 genomes]
rs4710434	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56950873	0.87[ASN][1000 genomes]
rs56977573	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57258726	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57519486	0.87[ASN][1000 genomes]
rs57899418	0.87[ASN][1000 genomes]
rs58016244	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58173616	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58374599	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58779953	0.87[ASN][1000 genomes]
rs59458355	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59589817	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60727297	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60863270	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61382532	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61426335	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61580957	0.86[ASN][1000 genomes]
rs6454298	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66500769	0.87[ASN][1000 genomes]
rs66508463	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66514362	0.85[EUR][1000 genomes]
rs66559225	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66618112	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66648865	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66683185	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66769846	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66924207	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66943356	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66984720	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67048845	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67118169	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67125777	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67260200	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67549604	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67640372	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67805256	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67879075	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67885904	1.00[ASN][1000 genomes]
rs6929720	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6936079	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72880876	0.87[ASN][1000 genomes]
rs72880879	0.87[ASN][1000 genomes]
rs72880884	0.87[ASN][1000 genomes]
rs72882716	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72882748	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72882751	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7746492	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7766283	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766347	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7767556	0.87[ASN][1000 genomes]
rs9449520	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64341000-64344600	Weak transcription	Fetal Intestine Large	intestine
2	chr6:64341000-64344600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:64341000-64344800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:64341600-64344800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:64341800-64344600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:64342600-64344800	Enhancers	HepG2	liver
7	chr6:64342800-64344600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:64343000-64344600	Weak transcription	Fetal Lung	lung
9	chr6:64343000-64345000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:64343000-64345000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:64343200-64345200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:64343400-64345200	Weak transcription	Pancreas	Pancrea
13	chr6:64343800-64344600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:64343800-64344800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr6:64344000-64345000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:64344000-64345200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:64344200-64345000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr6:64344200-64345000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:64344200-64345200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:64344400-64344600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:64344400-64344600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:64344400-64344600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:64344400-64344600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:64344400-64344600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:64344400-64344600	Enhancers	Fetal Heart	heart
26	chr6:64344400-64344800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:64344400-64344800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:64344400-64344800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr6:64344400-64344800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:64344400-64344800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr6:64344400-64344800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:64344400-64344800	Enhancers	Dnd41	blood
33	chr6:64344400-64344800	Enhancers	K562	blood
34	chr6:64344400-64345000	Enhancers	Primary T cells from cord blood	blood
35	chr6:64344400-64345000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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