Variant report

Variant	rs1908409
Chromosome Location	chr5:116597752-116597753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116591259..116593842-chr5:116596466..116598545,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10035146	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10037418	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066055	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10068673	0.81[EUR][1000 genomes]
rs10079309	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10080021	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10085046	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463690	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10478339	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11957082	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652528	0.84[EUR][1000 genomes]
rs13170803	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13184380	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1353285	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1389934	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494818	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494820	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1494821	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494823	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565889	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1565890	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1908408	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976282	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2036024	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2220858	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2900101	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34469130	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35793287	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4331937	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4435900	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4642406	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55813945	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56020309	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60269947	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6595020	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6595026	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595028	0.83[EUR][1000 genomes]
rs6862441	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6870246	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6891356	0.82[EUR][1000 genomes]
rs7702997	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7703434	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710974	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7712165	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7714476	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7729749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730432	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732328	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7736463	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116592000-116598000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:116592400-116597800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:116594000-116598200	Weak transcription	Fetal Brain Male	brain
4	chr5:116597200-116597800	Weak transcription	Brain Anterior Caudate	brain
5	chr5:116597400-116597800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:116597400-116599400	Enhancers	Cortex derived primary cultured neurospheres	brain

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