Variant report

Variant	rs190879156
Chromosome Location	chr13:51069345-51069346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNASEH2B-3	chr13:51069312-51069605	NONHSAT033856

Extended variants
information (count: 61 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:61 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1040	chr13:51041591-51090903	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv510585	chr13:51057884-51083783	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3324259	chr13:51061000-51084959	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1835159	chr13:51061044-51091390	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv1815534	chr13:51061044-51092946	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1816672	chr13:51061044-51092946	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv1830736	chr13:51061044-51092946	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv1834352	chr13:51061044-51092946	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv1841390	chr13:51061044-51092946	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv1843375	chr13:51061044-51092946	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv1010553	chr13:51063137-51075373	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv561633	chr13:51065836-51074331	Enhancers Flanking Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv561634	chr13:51065836-51074693	Enhancers Flanking Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv1794077	chr13:51066837-51083316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv3506318	chr13:51067351-51076949	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3522412	chr13:51068201-51076199	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3506307	chr13:51068376-51076324	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv2550436	chr13:51068650-51075611	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3522417	chr13:51068651-51076099	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv561635	chr13:51068896-51074331	Enhancers	lncRNA	n/a	inside rSNPs	diseases
25	esv1824381	chr13:51068896-51074693	Enhancers	lncRNA	n/a	inside rSNPs	diseases
26	esv1824955	chr13:51068896-51074693	Enhancers	lncRNA	n/a	inside rSNPs	diseases
27	esv1844527	chr13:51068896-51074693	Enhancers	lncRNA	n/a	inside rSNPs	diseases
28	esv3506362	chr13:51068933-51075388	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv512317	chr13:51069002-51075088	Enhancers	lncRNA	n/a	inside rSNPs	diseases
30	esv3522410	chr13:51069028-51076406	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv511516	chr13:51069094-51074693	Enhancers	lncRNA	n/a	inside rSNPs	diseases
32	esv6426	chr13:51069102-51075259	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv3506340	chr13:51069151-51075599	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	esv2027268	chr13:51069156-51075262	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
35	esv3522407	chr13:51069221-51075331	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
36	esv3506396	chr13:51069229-51075162	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
37	esv3522414	chr13:51069237-51075216	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
38	esv3522416	chr13:51069255-51075163	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
39	esv3522411	chr13:51069262-51075123	Enhancers	lncRNA	n/a	inside rSNPs	diseases
40	esv3522409	chr13:51069269-51075127	Enhancers	lncRNA	n/a	inside rSNPs	diseases
41	esv3506384	chr13:51069271-51075150	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
42	esv3506351	chr13:51069278-51075146	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	esv3506373	chr13:51069289-51075106	Enhancers	lncRNA	n/a	inside rSNPs	diseases
44	esv3522413	chr13:51069289-51075124	Enhancers	lncRNA	n/a	inside rSNPs	diseases
45	esv3522406	chr13:51069289-51075129	Enhancers	lncRNA	n/a	inside rSNPs	diseases
46	nsv435640	chr13:51069294-51075804	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
47	esv1792555	chr13:51069300-51073931	Enhancers	lncRNA	n/a	inside rSNPs	diseases
48	esv1792565	chr13:51069300-51073931	Enhancers	lncRNA	n/a	inside rSNPs	diseases
49	esv1806075	chr13:51069300-51073931	Enhancers	lncRNA	n/a	inside rSNPs	diseases
50	esv1813602	chr13:51069300-51073931	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51067600-51069400	Enhancers	Fetal Thymus	thymus
2	chr13:51068000-51069400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr13:51068600-51070000	Enhancers	Dnd41	blood
4	chr13:51069000-51069400	Enhancers	Adipose Nuclei	Adipose

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