Variant report

Variant	rs190890629
Chromosome Location	chr4:69084724-69084725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:69084723-69084773	PrEC	prostate:	n/a
2	chr4:69084723-69084773	T-47D	breast:	n/a
3	chr4:69084723-69084773	GM12878	blood:	n/a
4	chr4:69084723-69084773	PFSK-1	brain:	n/a
5	chr4:69084723-69084773	CMK	blood:	n/a
6	chr4:69084723-69084773	PANC-1	pancreas:	n/a
7	chr4:69084723-69084773	HNPCEpiC	eye:	n/a
8	chr4:69084723-69084773	HRE	kidney:	n/a
9	chr4:69084723-69084773	ovcar-3	ovarian:	n/a
10	chr4:69084723-69084773	HCF	heart:	n/a
11	chr4:69084723-69084773	SK-N-SH_RA	brain:	n/a
12	chr4:69084723-69084773	HCPEpiC	choroid plexus:	n/a
13	chr4:69084723-69084773	HEK293	kidney:	embryo
14	chr4:69084723-69084773	Hepatocyte	liver:	n/a
15	chr4:69084723-69084773	NB4	blood:	n/a
16	chr4:69084723-69084773	HCT-116	colon:	n/a
17	chr4:69084723-69084773	HAEpiC	amniotic membrane:	n/a
18	chr4:69084723-69084773	SK-N-SH	brain:	n/a
19	chr4:69084723-69084773	GM19239	blood:	n/a
20	chr4:69084723-69084773	IMR90	lung:	fetal
21	chr4:69084723-69084773	SKMC	muscle:	n/a
22	chr4:69084723-69084773	A549	lung:	n/a
23	chr4:69084723-69084773	HL-60	blood:	n/a
24	chr4:69084723-69084773	AG09319	gingival:	n/a
25	chr4:69084723-69084773	AG10803	skin:	n/a
26	chr4:69084723-69084773	AG09309	skin:	n/a
27	chr4:69084723-69084773	HPAEpiC	pulmonary alveolar:	n/a
28	chr4:69084723-69084773	ProgFib	skin:	n/a
29	chr4:69084723-69084773	Hela-S3	cervix:	n/a
30	chr4:69084723-69084773	NHDF-neo	bronchial:	n/a
31	chr4:69084723-69084773	GM12891	blood:	n/a
32	chr4:69084723-69084773	BJ	skin:	n/a
33	chr4:69084723-69084773	NHBE	bronchial:	n/a
34	chr4:69084723-69084773	MCF-7	breast:	n/a
35	chr4:69084723-69084773	HIPEpiC	eye:	n/a
36	chr4:69084723-69084773	RPTEC	kidney:	n/a
37	chr4:69084723-69084773	SAEC	small airway:	n/a
38	chr4:69084723-69084773	HepG2	liver:	n/a
39	chr4:69084723-69084773	K562	blood:	n/a
40	chr4:69084723-69084773	AG04449	skin:	fetal
41	chr4:69084723-69084773	HUVEC	blood vessel:	n/a
42	chr4:69084723-69084773	Jurkat	blood:	n/a
43	chr4:69084723-69084773	Caco-2	colon:	n/a
44	chr4:69084723-69084773	HRCEpiC	kidney:	n/a
45	chr4:69084723-69084773	SK-N-MC	brain:	n/a
46	chr4:69084723-69084773	HEEpiC	esophagus:	n/a
47	chr4:69084723-69084773	NT2-D1	testis:	n/a
48	chr4:69084723-69084773	NH-A	brain:	n/a
49	chr4:69084723-69084773	U87	brain:	n/a
50	chr4:69084723-69084773	HMEC	breast:	n/a

No data

Variant related genes	Relation type
ENSG00000250026	CpG island
TMPRSS11BNL	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008084	chr4:68797598-69482831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv537131	chr4:68797598-69482831	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1812438	chr4:68943858-69154222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1806586	chr4:68943858-69592846	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv461546	chr4:69049643-69223057	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv594506	chr4:69049643-69223057	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv963605	chr4:69083609-69086551	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv520487	chr4:69083953-69095197	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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