Variant report

Variant	rs1908944
Chromosome Location	chr18:30718995-30718996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr18:30718795-30719174	U2OS	brain:	n/a	n/a
2	KAP1	chr18:30718836-30719067	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
CCDC178	TF binding region

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11660410	0.98[ASN][1000 genomes]
rs1482946	0.98[ASN][1000 genomes]
rs156186	0.91[ASN][1000 genomes]
rs156368	0.98[ASN][1000 genomes]
rs156369	0.98[ASN][1000 genomes]
rs1600999	0.93[ASN][1000 genomes]
rs16964280	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16964286	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16964310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182105	0.98[ASN][1000 genomes]
rs190614	0.98[ASN][1000 genomes]
rs200432	0.98[ASN][1000 genomes]
rs2626370	0.98[ASN][1000 genomes]
rs271434	0.88[ASN][1000 genomes]
rs271435	0.88[ASN][1000 genomes]
rs271436	0.88[ASN][1000 genomes]
rs271437	0.88[ASN][1000 genomes]
rs271438	0.91[ASN][1000 genomes]
rs271443	0.98[ASN][1000 genomes]
rs271444	0.98[ASN][1000 genomes]
rs271445	0.98[ASN][1000 genomes]
rs271446	0.98[ASN][1000 genomes]
rs271447	0.98[ASN][1000 genomes]
rs271448	0.98[ASN][1000 genomes]
rs271449	0.98[ASN][1000 genomes]
rs271450	0.98[ASN][1000 genomes]
rs271451	0.98[ASN][1000 genomes]
rs271452	0.98[ASN][1000 genomes]
rs271453	0.98[ASN][1000 genomes]
rs271462	0.98[ASN][1000 genomes]
rs271463	0.98[ASN][1000 genomes]
rs271490	0.98[ASN][1000 genomes]
rs271491	0.98[ASN][1000 genomes]
rs271492	0.98[ASN][1000 genomes]
rs271493	0.98[ASN][1000 genomes]
rs271494	0.98[ASN][1000 genomes]
rs271495	0.98[ASN][1000 genomes]
rs271497	0.98[ASN][1000 genomes]
rs271498	0.98[ASN][1000 genomes]
rs271499	0.98[ASN][1000 genomes]
rs271500	0.98[ASN][1000 genomes]
rs271502	0.98[ASN][1000 genomes]
rs271526	0.98[ASN][1000 genomes]
rs271527	0.98[ASN][1000 genomes]
rs271528	0.98[ASN][1000 genomes]
rs271529	0.98[ASN][1000 genomes]
rs271530	0.98[ASN][1000 genomes]
rs271531	0.87[ASN][1000 genomes]
rs271532	0.87[ASN][1000 genomes]
rs271537	0.87[ASN][1000 genomes]
rs271538	0.87[ASN][1000 genomes]
rs271539	0.87[ASN][1000 genomes]
rs271540	0.87[ASN][1000 genomes]
rs271559	0.91[ASN][1000 genomes]
rs271560	0.95[ASN][1000 genomes]
rs271561	0.95[ASN][1000 genomes]
rs271564	0.95[ASN][1000 genomes]
rs271565	0.95[ASN][1000 genomes]
rs271570	0.95[ASN][1000 genomes]
rs271571	0.95[ASN][1000 genomes]
rs271572	0.95[ASN][1000 genomes]
rs271573	0.95[ASN][1000 genomes]
rs271575	0.98[ASN][1000 genomes]
rs271577	0.98[ASN][1000 genomes]
rs271578	0.98[ASN][1000 genomes]
rs271579	0.98[ASN][1000 genomes]
rs271581	0.98[ASN][1000 genomes]
rs271582	0.97[ASN][1000 genomes]
rs271583	0.98[ASN][1000 genomes]
rs28368446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28378753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28504670	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs402801	0.98[ASN][1000 genomes]
rs418480	0.98[ASN][1000 genomes]
rs457802	0.98[ASN][1000 genomes]
rs458002	0.98[ASN][1000 genomes]
rs463489	0.98[ASN][1000 genomes]
rs466500	0.98[ASN][1000 genomes]
rs466881	0.87[ASN][1000 genomes]
rs56092912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56168034	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56292815	0.96[ASN][1000 genomes]
rs56983919	0.96[ASN][1000 genomes]
rs57204429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67772507	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67881407	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68190773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7238193	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72943339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945332	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945335	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945380	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72947150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72947170	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72947172	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72947174	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72949130	1.00[EUR][1000 genomes]
rs8082980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085506	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8085979	0.93[ASN][1000 genomes]
rs968668	0.98[ASN][1000 genomes]
rs9947012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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