Variant report

Variant	rs1909118
Chromosome Location	chr1:61558005-61558006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61514738..61525752-chr1:61554119..61562013,14	K562	blood:
2	chr1:61517870..61519563-chr1:61557073..61560001,2	K562	blood:
3	chr1:61514738..61517434-chr1:61556907..61559504,2	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10493302	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889206	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12082005	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12133298	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1391432	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2050544	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807990	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs334735	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs334736	0.88[EUR][1000 genomes]
rs334738	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs384893	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4430360	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4620575	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs6670604	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9436630	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs964091	0.81[YRI][hapmap];0.88[AFR][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61549400-61558400	Weak transcription	Spleen	Spleen
2	chr1:61549800-61559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:61550200-61559400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:61550400-61560000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:61550600-61561000	Weak transcription	Colonic Mucosa	Colon
6	chr1:61550800-61559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:61554400-61559400	Weak transcription	Osteobl	bone
8	chr1:61554600-61558400	Active TSS	Aorta	Aorta
9	chr1:61554600-61558400	Weak transcription	Lung	lung
10	chr1:61554600-61558800	Enhancers	Fetal Heart	heart
11	chr1:61554600-61559400	Weak transcription	Left Ventricle	heart
12	chr1:61554600-61559400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:61554600-61559400	Weak transcription	HMEC	breast
14	chr1:61554600-61560200	Weak transcription	Ovary	ovary
15	chr1:61554600-61561800	Weak transcription	Pancreas	Pancrea
16	chr1:61554600-61563000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr1:61554600-61565800	Weak transcription	Gastric	stomach
18	chr1:61554600-61567000	Weak transcription	NHLF	lung
19	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
20	chr1:61554800-61558400	Weak transcription	Fetal Intestine Large	intestine
21	chr1:61554800-61559200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr1:61554800-61561200	Active TSS	Fetal Brain Female	brain
23	chr1:61554800-61563200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr1:61555000-61559000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:61555000-61563000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:61555200-61558800	Enhancers	Colon Smooth Muscle	Colon
27	chr1:61555200-61559200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:61555400-61565800	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:61555800-61560200	Enhancers	Liver	Liver
30	chr1:61555800-61563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:61556000-61558600	Genic enhancers	HepG2	liver
32	chr1:61556200-61561400	Enhancers	Rectal Smooth Muscle	rectum
33	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr1:61556400-61559600	Weak transcription	HUVEC	blood vessel
35	chr1:61556400-61560800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:61556400-61560800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:61556600-61559600	Weak transcription	Fetal Stomach	stomach
38	chr1:61556600-61563000	Weak transcription	HSMM	muscle
39	chr1:61556600-61567000	Weak transcription	HSMMtube	muscle
40	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr1:61556800-61558200	Weak transcription	Psoas Muscle	Psoas
42	chr1:61556800-61558400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:61556800-61558600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:61556800-61559200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:61556800-61561200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:61556800-61561600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:61557000-61558600	Enhancers	Brain Angular Gyrus	brain
48	chr1:61557000-61558800	Enhancers	Brain Substantia Nigra	brain
49	chr1:61557200-61558200	Enhancers	Brain Germinal Matrix	brain
50	chr1:61557200-61558800	Enhancers	Adipose Nuclei	Adipose

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