Variant report

Variant	rs191184746
Chromosome Location	chr3:120170218-120170219
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:120169294-120170418	HUVEC	blood vessel:	n/a	n/a
2	CHD2	chr3:120169588-120170676	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr3:120170197-120170662	H1-hESC	embryonic stem cell:	n/a	n/a
4	EP300	chr3:120168313-120170325	SK-N-SH	brain:	n/a	chr3:120170155-120170171 chr3:120169999-120170008 chr3:120168364-120168372 chr3:120168652-120168666 chr3:120169971-120169987 chr3:120170156-120170172 chr3:120170168-120170184
5	TAF1	chr3:120169120-120170230	ECC-1	luminal epithelium:	n/a	n/a
6	EP300	chr3:120169433-120170537	ECC-1	luminal epithelium:	n/a	chr3:120170155-120170171 chr3:120169999-120170008 chr3:120169971-120169987 chr3:120170156-120170172 chr3:120170168-120170184
7	POLR2A	chr3:120169441-120170234	Gliobla	brain:	n/a	n/a
8	ZNF263	chr3:120168617-120171030	HEK293-T-REx	kidney:	n/a	chr3:120170495-120170504 chr3:120170564-120170573 chr3:120169280-120169289
9	POLR2A	chr3:120168323-120170539	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr3:120167198-120170323	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr3:120168881-120170749	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr3:120169491-120170313	H1-hESC	embryonic stem cell:	n/a	chr3:120169981-120169994 chr3:120170048-120170058
13	JUND	chr3:120170127-120170306	H1-hESC	embryonic stem cell:	n/a	chr3:120170265-120170274
14	CTBP2	chr3:120169299-120170767	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr3:120167154-120170862	H1-hESC	embryonic stem cell:	n/a	n/a
16	RAD21	chr3:120168463-120170492	IMR90	lung:	n/a	chr3:120169134-120169144 chr3:120169981-120169994 chr3:120170048-120170058 chr3:120169133-120169146
17	CHD1	chr3:120166596-120170724	IMR90	lung:	n/a	chr3:120170701-120170708 chr3:120169213-120169220
18	ZBTB7A	chr3:120169070-120170541	ECC-1	luminal epithelium:	n/a	chr3:120170200-120170208 chr3:120169859-120169866 chr3:120170040-120170047
19	TAF1	chr3:120169036-120170225	ECC-1	luminal epithelium:	n/a	n/a
20	MAX	chr3:120169598-120170278	ECC-1	luminal epithelium:	n/a	chr3:120169693-120169703
21	BACH1	chr3:120170103-120170613	H1-hESC	embryonic stem cell:	n/a	n/a
22	MAZ	chr3:120167285-120171077	IMR90	lung:	n/a	chr3:120167641-120167651 chr3:120169693-120169703
23	TBP	chr3:120168951-120170574	H1-hESC	embryonic stem cell:	n/a	n/a
24	SIN3A	chr3:120168576-120170738	H1-hESC	embryonic stem cell:	n/a	chr3:120169458-120169469
25	ZBTB7A	chr3:120169242-120170683	ECC-1	luminal epithelium:	n/a	chr3:120170200-120170208 chr3:120169859-120169866 chr3:120170040-120170047
26	POLR2A	chr3:120168338-120170262	HUVEC	blood vessel:	n/a	n/a
27	RFX5	chr3:120170075-120170233	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
FSTL1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1012127	chr3:120015620-120272893	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv536707	chr3:120015620-120272893	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv3338035	chr3:120168487-120171035	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3405166	chr3:120168887-120171435	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120167400-120170400	Active TSS	Psoas Muscle	Psoas
2	chr3:120167600-120170400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
3	chr3:120168000-120170400	Active TSS	Brain Hippocampus Middle	brain
4	chr3:120168000-120170400	Active TSS	Left Ventricle	heart
5	chr3:120168000-120170400	Active TSS	NHDF-Ad	bronchial
6	chr3:120168000-120170600	Active TSS	Brain Anterior Caudate	brain
7	chr3:120168000-120170600	Active TSS	Right Atrium	heart
8	chr3:120168200-120170400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:120168200-120170400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:120168200-120170400	Active TSS	Aorta	Aorta
11	chr3:120168200-120170400	Active TSS	NHLF	lung
12	chr3:120168200-120170600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr3:120168200-120170600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:120168200-120170600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:120168200-120170600	Active TSS	Colon Smooth Muscle	Colon
16	chr3:120168200-120170600	Active TSS	Placenta Amnion	Placenta Amnion
17	chr3:120168200-120170600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
18	chr3:120168400-120170400	Active TSS	H1 Cell Line	embryonic stem cell
19	chr3:120168400-120170400	Active TSS	Brain Angular Gyrus	brain
20	chr3:120168400-120170400	Active TSS	Fetal Stomach	stomach
21	chr3:120168400-120170400	Active TSS	Ovary	ovary
22	chr3:120168400-120170400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
23	chr3:120168400-120170400	Active TSS	A549	lung
24	chr3:120168400-120170400	Active TSS	HUVEC	blood vessel
25	chr3:120168400-120170600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:120168400-120170600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr3:120168400-120170600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
28	chr3:120168400-120170600	Active TSS	Lung	lung
29	chr3:120168400-120170600	Active TSS	HSMM	muscle
30	chr3:120168400-120170600	Active TSS	HSMMtube	muscle
31	chr3:120168400-120170800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:120168400-120170800	Active TSS	NH-A	brain
33	chr3:120168400-120171000	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr3:120168600-120170400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:120168600-120170400	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr3:120168600-120170400	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr3:120168600-120170400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:120168600-120170600	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr3:120168600-120170600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:120168600-120170600	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr3:120168600-120170600	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr3:120168600-120170600	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr3:120168600-120170600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:120168800-120170400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:120168800-120170400	Active TSS	Brain Cingulate Gyrus	brain
46	chr3:120168800-120170400	Active TSS	Brain Substantia Nigra	brain
47	chr3:120168800-120170400	Active TSS	Fetal Lung	lung
48	chr3:120168800-120170400	Bivalent/Poised TSS	Small Intestine	intestine
49	chr3:120168800-120170600	Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr3:120168800-120170600	Active TSS	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links