Variant report

Variant	rs191220959
Chromosome Location	chr4:48337468-48337469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48329154..48338368-chr4:48340296..48348694,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109171	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv275483	chr4:48336371-48338344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48330000-48342400	Weak transcription	Esophagus	oesophagus
2	chr4:48331600-48339400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:48331600-48339600	Weak transcription	Stomach Mucosa	stomach
4	chr4:48331600-48340800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:48332600-48339200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:48333000-48341800	Weak transcription	A549	lung
7	chr4:48333000-48342400	Weak transcription	Left Ventricle	heart
8	chr4:48333800-48338400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:48334000-48341400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:48334200-48339600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:48334200-48340200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:48334200-48342000	Weak transcription	Fetal Heart	heart
13	chr4:48334200-48342000	Weak transcription	HSMM	muscle
14	chr4:48334200-48342200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:48334200-48342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:48334400-48342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:48334800-48341600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:48335600-48338400	Enhancers	Hela-S3	cervix
19	chr4:48335600-48339600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:48335800-48342000	Weak transcription	Fetal Kidney	kidney
21	chr4:48336000-48337600	Enhancers	Placenta	Placenta
22	chr4:48336000-48338000	Weak transcription	NHDF-Ad	bronchial
23	chr4:48336200-48338200	Enhancers	Psoas Muscle	Psoas
24	chr4:48336400-48338400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:48336400-48338800	Weak transcription	NHEK	skin
26	chr4:48336400-48339000	Weak transcription	HMEC	breast
27	chr4:48336400-48339400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:48336400-48342000	Weak transcription	Osteobl	bone
29	chr4:48336600-48338400	Enhancers	Fetal Muscle Leg	muscle
30	chr4:48336800-48337600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr4:48336800-48337600	Flanking Active TSS	K562	blood
32	chr4:48336800-48337800	Enhancers	Fetal Thymus	thymus
33	chr4:48336800-48339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:48337000-48337600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:48337000-48337600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:48337000-48337800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:48337200-48339800	Weak transcription	Fetal Lung	lung
38	chr4:48337400-48337800	Weak transcription	NHLF	lung
39	chr4:48337400-48339000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:48337400-48339200	Weak transcription	Thymus	Thymus
41	chr4:48337400-48341600	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links