Variant report

Variant	rs1915674
Chromosome Location	chr10:53003006-53003007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10490978	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10822481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822496	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1865645	0.91[ASN][1000 genomes]
rs1915672	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1915673	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2219884	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3844130	0.90[ASN][1000 genomes]
rs7079584	0.83[ASN][1000 genomes]
rs9943367	0.83[ASN][1000 genomes]
rs9943368	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
2	chr10:52992200-53003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:52993000-53003200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:52994000-53003200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:52999800-53004600	Weak transcription	Right Atrium	heart
7	chr10:53000000-53004400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:53000400-53004200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:53000600-53004000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:53001200-53005800	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:53001400-53003200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:53001800-53003400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:53001800-53004200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:53001800-53004800	Enhancers	Psoas Muscle	Psoas
15	chr10:53001800-53005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:53002000-53003600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:53002400-53003800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:53002800-53003600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:53002800-53003600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:53003000-53003200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:53003000-53003200	Enhancers	Fetal Brain Male	brain
22	chr10:53003000-53003200	Enhancers	Left Ventricle	heart
23	chr10:53003000-53004400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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