Variant report

Variant	rs1916770
Chromosome Location	chr7:145171614-145171615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1528012	1.00[AMR][1000 genomes]
rs850393	0.83[AMR][1000 genomes]
rs850397	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026333	chr7:145094377-145283848	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029730	chr7:145125332-145253704	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145171000-145171800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:145171000-145171800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr7:145171000-145171800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:145171000-145171800	Enhancers	Fetal Kidney	kidney
5	chr7:145171200-145171800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:145171200-145172000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:145171400-145172000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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