Variant report

Variant	rs1917817
Chromosome Location	chr10:50789851-50789852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10776582	0.89[ASN][1000 genomes]
rs10857507	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10857508	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10857509	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11101159	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11101164	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11101165	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101175	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11527800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12221479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12242851	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12412526	0.81[EUR][1000 genomes]
rs12570332	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1917801	0.89[AMR][1000 genomes]
rs1917802	0.89[AMR][1000 genomes]
rs1949883	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1949884	0.83[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2103202	0.81[ASN][1000 genomes]
rs2177820	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3750746	0.87[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap]
rs3750751	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap]
rs4240510	0.81[EUR][1000 genomes]
rs4253023	0.89[AMR][1000 genomes]
rs4253079	0.81[EUR][1000 genomes]
rs4253231	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap]
rs4453140	0.88[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4838522	0.81[EUR][1000 genomes]
rs4838527	0.89[AMR][1000 genomes]
rs4838529	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6537539	0.82[ASN][1000 genomes]
rs7078115	0.89[ASN][1000 genomes]
rs7080837	0.89[ASN][1000 genomes]
rs7081904	0.89[ASN][1000 genomes]
rs7095259	0.89[ASN][1000 genomes]
rs7098129	0.80[ASN][1000 genomes]
rs72795703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50781200-50792000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:50782200-50790200	Weak transcription	Osteobl	bone
3	chr10:50787800-50793000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:50787800-50793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:50787800-50793000	Weak transcription	NHEK	skin
6	chr10:50788000-50793000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:50788200-50793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:50788400-50793200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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