Variant report

Variant	rs1918372
Chromosome Location	chr7:80362678-80362679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80355745..80357292-chr7:80360704..80362983,2	MCF-7	breast:
2	chr7:80353835..80356426-chr7:80361541..80363244,2	MCF-7	breast:
3	chr7:80361578..80363736-chr7:80369634..80371408,2	MCF-7	breast:
4	chr7:80361342..80364032-chr7:80368718..80371307,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10808255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11770916	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12670520	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405746	0.89[AFR][1000 genomes]
rs1527466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527473	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609152	0.89[AFR][1000 genomes]
rs1852539	0.86[AFR][1000 genomes]
rs1918371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1949970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2222713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886791	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467363	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467371	0.80[AFR][1000 genomes]
rs6958853	1.00[AMR][1000 genomes]
rs6958863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963015	0.97[AFR][1000 genomes]
rs6969280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9641897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80355400-80365800	Weak transcription	HSMM	muscle
2	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80359400-80365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:80359400-80370200	Weak transcription	NHLF	lung
6	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
7	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:80359800-80363000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
10	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:80362600-80363000	Weak transcription	Fetal Stomach	stomach

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