Variant report

Variant	rs1918594
Chromosome Location	chr7:48635356-48635357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:198)

rs_ID	r²[population]
rs10254742	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10256975	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs10271606	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10499682	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs10499683	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10499684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1109443	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs11185608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12112361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12113920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12113960	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12538472	0.87[AMR][1000 genomes]
rs12669930	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs12669976	0.81[EUR][1000 genomes]
rs12670340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12671073	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12672551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12673070	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12674031	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12674401	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12674424	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1316821	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1317162	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1405920	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs1527835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1527839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1527840	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs1609212	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1609213	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1609214	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17092931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132335	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs17132373	0.81[EUR][1000 genomes]
rs17132376	0.81[EUR][1000 genomes]
rs17132383	0.81[EUR][1000 genomes]
rs17132388	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs17132417	0.81[EUR][1000 genomes]
rs17132425	0.81[JPT][hapmap]
rs17132439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132443	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132460	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132479	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132491	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132511	0.87[AMR][1000 genomes]
rs17132514	0.87[AMR][1000 genomes]
rs1918580	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918581	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918586	0.89[CEU][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918587	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918589	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918595	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1918596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918597	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918598	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918600	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1918601	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1918608	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1918613	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs2141249	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2141251	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2178086	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2178087	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2222731	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2885484	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs34252471	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41332948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4144061	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4144063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4144064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4144067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4144068	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4295610	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4296993	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4398852	0.85[ASN][1000 genomes]
rs4587280	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55735040	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55903755	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55974693	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56134922	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56205257	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56213942	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56232183	0.81[EUR][1000 genomes]
rs56241442	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56393952	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56408667	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56798342	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56806901	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57226042	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57370511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57401097	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57877708	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58043122	0.82[AMR][1000 genomes]
rs58054917	0.81[EUR][1000 genomes]
rs58077564	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58321909	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58433353	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58481134	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58486673	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58635193	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59100514	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59243715	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59549039	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59673264	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60184691	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60813775	0.85[EUR][1000 genomes]
rs60918397	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61171557	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61310674	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61562434	0.81[EUR][1000 genomes]
rs61602397	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61649354	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61706229	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583452	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583456	0.92[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs66481137	0.87[AMR][1000 genomes]
rs66522605	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66591834	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66729625	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66763020	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66785002	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66793444	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66909576	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67040412	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67074321	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67081192	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67163301	0.81[EUR][1000 genomes]
rs67187623	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67208890	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67249167	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67249859	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67294077	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67298249	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67316911	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67331245	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67370671	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67398358	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67429470	0.87[AMR][1000 genomes]
rs67744396	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67744565	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67748204	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67764854	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67845756	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67852079	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67875048	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67985903	0.81[EUR][1000 genomes]
rs68007434	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68029531	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68084496	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68110103	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68168969	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68179951	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6944801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6954223	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6955102	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6957309	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6963717	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6966994	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6968069	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs6970434	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6972202	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6972440	0.81[EUR][1000 genomes]
rs6973231	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs6977997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980042	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980069	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73094625	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73109344	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73109355	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73109362	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73109364	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73109382	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73109385	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73109399	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73109401	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73111405	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7455877	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7457791	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7776966	0.81[JPT][hapmap]
rs7778895	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7781149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7781150	0.86[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs7785069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7792728	0.81[JPT][hapmap]
rs7804139	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7806480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7807529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7810275	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9690617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9691143	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9691391	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48632600-48637000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:48634000-48640200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:48634200-48635800	Strong transcription	Primary hematopoietic stem cells	blood

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