Variant report

Variant	rs1920189
Chromosome Location	chr3:116122953-116122954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1619655	0.89[EUR][1000 genomes]
rs17646258	0.87[EUR][1000 genomes]
rs1835674	0.88[EUR][1000 genomes]
rs1920185	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2163504	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28504104	0.91[EUR][1000 genomes]
rs4521220	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6785974	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs724115	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7627104	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7648197	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9845203	0.91[EUR][1000 genomes]
rs9852860	0.83[EUR][1000 genomes]
rs9856796	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116117600-116124000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:116118800-116123800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:116119000-116123800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:116119200-116123800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:116119800-116133600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:116120400-116126000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:116122000-116127200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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