Variant report

Variant	rs192022930
Chromosome Location	chr15:79244655-79244656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr15:79244091-79244759	HepG2	liver:	n/a	n/a
2	ELF1	chr15:79244290-79244707	HepG2	liver:	n/a	chr15:79244605-79244616 chr15:79244606-79244615
3	ZBTB7A	chr15:79244450-79244713	HepG2	liver:	n/a	n/a
4	RCOR1	chr15:79244311-79244682	K562	blood:	n/a	n/a
5	SIN3AK20	chr15:79243896-79244887	MCF-7	breast:	n/a	n/a
6	FOXA1	chr15:79244212-79244702	HepG2	liver:	n/a	chr15:79244485-79244500
7	GATA3	chr15:79244034-79244862	MCF-7	breast:	n/a	chr15:79244746-79244755 chr15:79244747-79244764 chr15:79244508-79244517 chr15:79244746-79244753 chr15:79244507-79244519 chr15:79244505-79244521
8	FOXA2	chr15:79244116-79244685	A549	lung:	n/a	n/a
9	CEBPB	chr15:79244279-79244669	Hela-S3	cervix:	n/a	n/a
10	FOXA2	chr15:79243947-79244776	A549	lung:	n/a	n/a
11	GATA3	chr15:79244094-79244806	MCF-7	breast:	n/a	chr15:79244746-79244755 chr15:79244747-79244764 chr15:79244508-79244517 chr15:79244746-79244753 chr15:79244507-79244519 chr15:79244505-79244521
12	JUN	chr15:79244052-79244795	K562	blood:	n/a	chr15:79244453-79244462
13	HDAC2	chr15:79244291-79244688	HepG2	liver:	n/a	n/a
14	FOSL2	chr15:79244003-79244755	MCF-7	breast:	n/a	chr15:79244453-79244462
15	POLR2A	chr15:79244298-79244663	PANC-1	pancreas:	n/a	n/a
16	GATA3	chr15:79244038-79244869	A549	lung:	n/a	chr15:79244746-79244755 chr15:79244747-79244764 chr15:79244508-79244517 chr15:79244746-79244753 chr15:79244507-79244519 chr15:79244505-79244521
17	FOSL2	chr15:79244149-79244741	A549	lung:	n/a	chr15:79244453-79244462

No.	Distal block	Cell Line	Cell type
1	chr15:79198022..79200286-chr15:79243264..79245188,2	K562	blood:
2	chr15:79242281..79244797-chr15:79245388..79247150,2	K562	blood:
3	chr15:79244340..79246222-chr15:79252129..79254810,2	K562	blood:
4	chr15:79238657..79240315-chr15:79242629..79245251,2	K562	blood:

Variant related genes	Relation type
CTSH	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79238600-79252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79240800-79245400	Enhancers	Stomach Mucosa	stomach
3	chr15:79241000-79245200	Enhancers	Liver	Liver
4	chr15:79241600-79245000	Enhancers	Pancreas	Pancrea
5	chr15:79241800-79244800	Enhancers	Fetal Intestine Large	intestine
6	chr15:79242000-79245400	Enhancers	Duodenum Mucosa	Duodenum
7	chr15:79242200-79244800	Enhancers	Lung	lung
8	chr15:79242400-79244800	Enhancers	Left Ventricle	heart
9	chr15:79242600-79245000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr15:79243200-79244800	Enhancers	HMEC	breast
11	chr15:79243200-79245000	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:79243200-79245000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:79243200-79245400	Enhancers	Hela-S3	cervix
14	chr15:79243400-79244800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:79243400-79244800	Enhancers	Ovary	ovary
16	chr15:79243600-79244800	Enhancers	Primary B cells from cord blood	blood
17	chr15:79243600-79244800	Enhancers	Right Atrium	heart
18	chr15:79243600-79245000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr15:79243600-79245400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr15:79243800-79244800	Enhancers	Placenta	Placenta
21	chr15:79243800-79245000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:79244000-79244800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr15:79244000-79263400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:79244200-79249000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:79244200-79253400	Weak transcription	Brain Angular Gyrus	brain
27	chr15:79244400-79245000	Enhancers	NHEK	skin
28	chr15:79244400-79247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:79244600-79245000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:79244600-79245600	Weak transcription	Psoas Muscle	Psoas
31	chr15:79244600-79245600	Enhancers	HepG2	liver
32	chr15:79244600-79249000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:79244600-79249000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:79244600-79249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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