Variant report

Variant	rs1920436
Chromosome Location	chr12:67791901-67791902
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10506547	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10784626	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1143758	0.90[JPT][hapmap]
rs2870938	0.95[ASN][1000 genomes]
rs4143175	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6581753	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6581756	0.83[ASN][1000 genomes]
rs7297753	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7310645	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7315612	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7316350	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs775648	0.84[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs775659	0.90[JPT][hapmap]
rs7959649	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1920436	GRIP1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67789800-67792800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67790000-67794600	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links