Variant report

Variant	rs1922749
Chromosome Location	chr12:86808980-86808981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10431399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10735250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs10745407	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs10745408	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs10745416	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10745419	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10776955	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs10776961	0.92[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10776966	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs10776968	0.91[AMR][1000 genomes]
rs10776969	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10776971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10776976	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10776977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858408	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs10858412	0.95[JPT][hapmap]
rs10858419	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10858425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10858427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10858428	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap]
rs10858444	0.83[JPT][hapmap]
rs11103983	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12317113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs12578669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs12582690	0.95[JPT][hapmap]
rs1463749	0.83[CEU][hapmap]
rs1493415	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1532262	0.81[CEU][hapmap]
rs1552839	0.81[CEU][hapmap]
rs1698787	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs1922742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1955399	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2091818	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2131565	0.84[CEU][hapmap]
rs2405923	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs2405925	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs2405928	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs2405930	0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs2406115	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs2406116	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs2406118	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs2406119	0.83[CEU][hapmap]
rs2406122	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs2406123	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs2406127	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs2406128	0.84[JPT][hapmap]
rs2406160	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2452806	0.84[CEU][hapmap]
rs2452807	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs2452811	0.81[CEU][hapmap]
rs2452815	0.81[CEU][hapmap]
rs2465143	0.83[CEU][hapmap]
rs2465144	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs2465149	0.81[CEU][hapmap]
rs2471560	0.84[JPT][hapmap]
rs2471564	0.81[CEU][hapmap]
rs2471568	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs2471569	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs2897278	0.84[CEU][hapmap]
rs2897280	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs4265650	0.86[CEU][hapmap];0.89[JPT][hapmap]
rs4370997	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4628748	0.92[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4842483	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs6538029	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs6538033	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs6538042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7135177	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs7137308	0.83[CEU][hapmap]
rs7139324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7297574	0.80[YRI][hapmap]
rs7299319	0.92[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs7303796	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7953196	0.92[CEU][hapmap];0.89[JPT][hapmap]
rs7957560	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs7963659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7964553	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs7972484	0.88[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs7973543	0.83[YRI][hapmap]
rs7973773	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs7977689	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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