Variant report

Variant	rs1922889
Chromosome Location	chr7:147632216-147632217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11771941	0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1574301	0.92[ASN][1000 genomes]
rs17237485	0.80[JPT][hapmap]
rs17237933	0.80[JPT][hapmap]
rs17432092	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17432209	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1997530	0.93[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs2141954	0.93[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs2178768	1.00[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs2178771	0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs2189883	1.00[JPT][hapmap]
rs2204926	0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2214682	1.00[JPT][hapmap]
rs2707553	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2707575	0.90[ASW][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2707576	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2707580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2707581	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2707585	0.93[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs2708248	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2708261	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2708284	0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2710074	0.81[ASN][1000 genomes]
rs2710075	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2710082	0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2859687	0.80[ASW][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap]
rs6946207	0.84[JPT][hapmap]
rs73168529	0.83[ASN][1000 genomes]
rs73168533	0.83[ASN][1000 genomes]
rs7794874	0.80[JPT][hapmap]
rs8180832	0.84[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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