Variant report

Variant	rs192295302
Chromosome Location	chr3:143220782-143220783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143212932..143214521-chr3:143217945..143220851,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv511204	chr3:143215072-143222874	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv523529	chr3:143215472-143229569	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv10334	chr3:143217154-143221569	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3515177	chr3:143218412-143222610	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv3496002	chr3:143218912-143222210	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv3515180	chr3:143219474-143221314	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3462587	chr3:143219474-143221326	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3515175	chr3:143219479-143221235	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3515176	chr3:143219501-143221254	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3462584	chr3:143219509-143221287	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3462586	chr3:143219509-143221296	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3515178	chr3:143219529-143221268	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3462583	chr3:143219530-143221244	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv513083	chr3:143219541-143221770	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3462582	chr3:143219571-143221224	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3515179	chr3:143219580-143221230	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3462588	chr3:143219587-143221223	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3515181	chr3:143219587-143221223	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv33993	chr3:143219664-143221256	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv18470	chr3:143219782-143221190	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv518873	chr3:143220697-143237419	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143186000-143223000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:143191400-143231000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143201800-143226400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:143209000-143226800	Weak transcription	Adipose Nuclei	Adipose
5	chr3:143212600-143224800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:143212600-143247400	Weak transcription	Primary T cells from cord blood	blood
7	chr3:143215600-143226800	Weak transcription	Fetal Stomach	stomach
8	chr3:143219800-143222200	Weak transcription	Esophagus	oesophagus
9	chr3:143220200-143220800	Enhancers	Brain Angular Gyrus	brain
10	chr3:143220200-143220800	Enhancers	Brain Germinal Matrix	brain
11	chr3:143220200-143221200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:143220200-143221200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:143220200-143221200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:143220200-143221200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:143220400-143220800	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:143220400-143220800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:143220400-143221000	Enhancers	Brain Substantia Nigra	brain
18	chr3:143220400-143221200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:143220400-143221200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:143220400-143221200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:143220400-143221200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:143220400-143221200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:143220400-143221200	Enhancers	Brain Hippocampus Middle	brain
24	chr3:143220400-143221400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:143220400-143221800	Enhancers	Fetal Lung	lung
26	chr3:143220400-143226400	Weak transcription	HSMMtube	muscle
27	chr3:143220600-143220800	Enhancers	Brain Anterior Caudate	brain
28	chr3:143220600-143221200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr3:143220600-143221200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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