Variant report

Variant	rs1924372
Chromosome Location	chr13:50945600-50945601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50943769..50946768-chr13:50949049..50951856,2	MCF-7	breast:
2	chr13:50531043..50532904-chr13:50944878..50946623,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12428189	0.86[EUR][1000 genomes]
rs12431131	0.86[EUR][1000 genomes]
rs1327644	0.81[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs1359860	0.86[EUR][1000 genomes]
rs149875	0.86[ASN][1000 genomes]
rs17074358	0.84[EUR][1000 genomes]
rs1924373	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200222	0.86[ASN][1000 genomes]
rs200223	0.86[ASN][1000 genomes]
rs200224	0.86[ASN][1000 genomes]
rs201796	0.81[ASN][1000 genomes]
rs201798	0.81[ASN][1000 genomes]
rs3116625	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35824953	0.82[ASN][1000 genomes]
rs430269	0.86[ASN][1000 genomes]
rs471315	0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56023535	0.88[EUR][1000 genomes]
rs56075206	0.88[EUR][1000 genomes]
rs58633776	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60379059	0.84[EUR][1000 genomes]
rs61962133	0.88[EUR][1000 genomes]
rs61962135	0.83[EUR][1000 genomes]
rs61964386	0.81[EUR][1000 genomes]
rs719103	0.83[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs7327154	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7983762	0.88[EUR][1000 genomes]
rs7996632	0.89[EUR][1000 genomes]
rs8000329	0.89[EUR][1000 genomes]
rs8000875	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8000921	0.89[EUR][1000 genomes]
rs9316495	0.80[JPT][hapmap]
rs9562962	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9562963	0.98[ASN][1000 genomes]
rs9562964	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9562965	0.82[ASN][1000 genomes]
rs9562966	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9562967	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9562968	0.89[EUR][1000 genomes]
rs9562970	0.89[EUR][1000 genomes]
rs9562972	0.89[EUR][1000 genomes]
rs9562973	0.88[EUR][1000 genomes]
rs9562974	0.86[EUR][1000 genomes]
rs9562980	0.81[EUR][1000 genomes]
rs9562981	0.81[EUR][1000 genomes]
rs9562982	0.81[EUR][1000 genomes]
rs9568396	0.84[AFR][1000 genomes]
rs9568397	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568398	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568399	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568400	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568402	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568403	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568404	0.90[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568405	0.80[JPT][hapmap];0.81[YRI][hapmap]
rs9568406	0.83[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9568407	0.88[EUR][1000 genomes]
rs9568408	0.89[EUR][1000 genomes]
rs9568409	0.89[EUR][1000 genomes]
rs9568410	0.88[EUR][1000 genomes]
rs9568412	0.86[EUR][1000 genomes]
rs9568413	0.86[EUR][1000 genomes]
rs9568414	0.86[EUR][1000 genomes]
rs9568415	0.86[EUR][1000 genomes]
rs9568419	0.81[EUR][1000 genomes]
rs9568422	0.81[EUR][1000 genomes]
rs9568423	0.81[EUR][1000 genomes]
rs9568424	0.81[EUR][1000 genomes]
rs9568425	0.81[EUR][1000 genomes]
rs9568427	0.81[EUR][1000 genomes]
rs9568428	0.81[EUR][1000 genomes]
rs9568429	0.81[EUR][1000 genomes]
rs9568430	0.81[EUR][1000 genomes]
rs9634832	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9634834	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50939800-50953400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:50940200-50952600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:50941000-50951200	Weak transcription	HepG2	liver
4	chr13:50941600-50952400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:50941800-50950200	Weak transcription	Gastric	stomach
6	chr13:50943000-50953600	Weak transcription	Psoas Muscle	Psoas
7	chr13:50943800-50945800	Enhancers	Primary B cells from peripheral blood	blood
8	chr13:50944600-50952600	Weak transcription	Fetal Heart	heart
9	chr13:50945200-50946000	Enhancers	NHDF-Ad	bronchial
10	chr13:50945400-50945800	Bivalent Enhancer	GM12878-XiMat	blood
11	chr13:50945400-50946200	Weak transcription	Fetal Lung	lung
12	chr13:50945600-50946200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links