Variant report

Variant	rs192468038
Chromosome Location	chr13:96461888-96461889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr13:96461855-96462005	H1-hESC	embryonic stem cell:	n/a	chr13:96461914-96461928 chr13:96461911-96461931 chr13:96461913-96461929

Variant related genes	Relation type
HMGN1P24	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96443800-96465600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96443800-96466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:96444400-96477600	Weak transcription	Brain Angular Gyrus	brain
4	chr13:96444400-96477600	Weak transcription	NHLF	lung
5	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
6	chr13:96445600-96477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:96445800-96490000	Weak transcription	HepG2	liver
8	chr13:96446200-96477400	Weak transcription	Gastric	stomach
9	chr13:96446400-96464800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:96446400-96466000	Weak transcription	NHEK	skin
11	chr13:96446800-96477400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:96446800-96477400	Weak transcription	HSMMtube	muscle
13	chr13:96447200-96477400	Weak transcription	Osteobl	bone
14	chr13:96449000-96462400	Weak transcription	Hela-S3	cervix
15	chr13:96449000-96464800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
17	chr13:96452800-96466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:96455000-96467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:96458800-96462200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr13:96458800-96477400	Weak transcription	NH-A	brain
21	chr13:96459800-96462200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:96459800-96462400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:96460000-96462200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:96460400-96477200	Weak transcription	A549	lung
25	chr13:96460400-96477400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:96461000-96465000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:96461400-96462000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:96461400-96462800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:96461600-96462000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:96461600-96462000	Strong transcription	Aorta	Aorta
31	chr13:96461600-96462000	ZNF genes & repeats	Liver	Liver
32	chr13:96461600-96462000	ZNF genes & repeats	Esophagus	oesophagus
33	chr13:96461600-96462000	ZNF genes & repeats	Lung	lung
34	chr13:96461600-96462000	ZNF genes & repeats	Spleen	Spleen
35	chr13:96461600-96462000	ZNF genes & repeats	HSMM	muscle
36	chr13:96461600-96462200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr13:96461600-96462200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:96461600-96462200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr13:96461600-96462200	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr13:96461600-96462200	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chr13:96461600-96462600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:96461600-96462600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr13:96461600-96462600	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr13:96461600-96462600	ZNF genes & repeats	Left Ventricle	heart
45	chr13:96461600-96462600	Strong transcription	Rectal Smooth Muscle	rectum
46	chr13:96461600-96462800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr13:96461600-96463400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:96461800-96462000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr13:96461800-96462000	Enhancers	Fetal Muscle Trunk	muscle
50	chr13:96461800-96462000	ZNF genes & repeats	Fetal Stomach	stomach

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