Variant report

Variant	rs1925141
Chromosome Location	chr6:56075487-56075488
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1012257	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1022539	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs1033478	0.96[CEU][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1205109	0.91[ASN][1000 genomes]
rs12199712	0.84[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs12199742	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs1319111	0.84[CEU][hapmap]
rs1319112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193925	0.92[JPT][hapmap]
rs13209836	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1480	0.83[CEU][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap]
rs1555097	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1925138	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1925143	0.81[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs1925147	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1925149	0.92[JPT][hapmap]
rs1925177	0.91[ASN][1000 genomes]
rs1925179	0.82[CEU][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap]
rs1925181	0.91[JPT][hapmap]
rs1925185	0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs1925186	0.84[EUR][1000 genomes]
rs1925189	0.83[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs1980487	0.81[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs2038149	0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs2206674	0.83[CEU][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap]
rs2328677	0.87[CEU][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2397204	0.87[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs2397206	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2397208	0.87[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap]
rs2397209	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2745366	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2745369	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2764046	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2764048	0.91[ASN][1000 genomes]
rs2764052	0.83[CEU][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs2840989	0.91[ASN][1000 genomes]
rs2840990	0.91[ASN][1000 genomes]
rs2840995	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2841000	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2841006	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs2841007	0.83[CEU][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs3817983	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs3846918	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3846920	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3846921	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846922	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs3846923	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs3846924	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs3857611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857612	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs3996940	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4119567	0.80[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs4126558	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs4379279	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs4495274	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs4573075	0.83[CEU][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs4596475	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4599643	0.87[CEU][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap]
rs4712113	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4715585	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs4715591	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4715592	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4715597	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6459127	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6459128	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs6459133	0.81[CEU][hapmap];0.83[CHB][hapmap];0.87[MEX][hapmap]
rs6459136	0.81[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs6909268	0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs6914495	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs6927919	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6933151	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs6939465	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs6939632	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7774374	0.87[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9296828	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs9296830	0.84[JPT][hapmap]
rs9357891	0.87[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs9370485	0.92[JPT][hapmap]
rs9370486	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs9370493	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382583	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382595	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs9396176	0.86[JPT][hapmap]
rs9475593	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9475621	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap]
rs994667	0.83[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung

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