Variant report

Variant	rs1925149
Chromosome Location	chr6:56100070-56100071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56081250..56083169-chr6:56099533..56102275,2	MCF-7	breast:
2	chr6:56098481..56101054-chr6:56102369..56105137,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1012257	0.91[ASN][1000 genomes]
rs1022539	0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1033478	0.84[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs12190324	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199712	0.92[CHB][hapmap];0.85[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199742	0.92[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1319111	0.84[CHB][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1319112	0.92[JPT][hapmap]
rs13193925	0.83[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13209836	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1480	0.82[CHB][hapmap]
rs1555097	0.92[JPT][hapmap]
rs1925138	0.89[ASN][1000 genomes]
rs1925139	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925141	0.92[JPT][hapmap]
rs1925143	0.92[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925144	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925145	0.82[AFR][1000 genomes]
rs1925147	0.92[JPT][hapmap]
rs1925179	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1925180	0.80[ASN][1000 genomes]
rs1925181	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1925185	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1925186	0.82[ASN][1000 genomes]
rs1925189	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980487	0.92[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2038149	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2038150	0.84[EUR][1000 genomes]
rs2206674	0.85[JPT][hapmap]
rs2223599	0.80[AMR][1000 genomes]
rs2223600	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2328675	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2328677	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2397204	0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2397206	0.82[ASN][1000 genomes]
rs2397208	0.92[CHB][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2745366	0.92[JPT][hapmap]
rs2745369	0.89[ASN][1000 genomes]
rs2764052	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2840995	0.83[ASN][1000 genomes]
rs2841000	0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2841006	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2841007	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2876630	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3817983	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs3846918	0.92[JPT][hapmap]
rs3846921	0.92[JPT][hapmap]
rs3846922	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3846923	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3846924	0.83[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846925	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3857611	0.92[JPT][hapmap]
rs3857612	0.82[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3996940	0.92[JPT][hapmap]
rs4119567	0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4126555	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4126556	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4126557	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4126558	0.91[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140573	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140574	0.91[AFR][1000 genomes]
rs4379279	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4490668	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4495274	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4554321	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4573075	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4596475	0.92[JPT][hapmap]
rs4599643	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4607420	0.83[ASN][1000 genomes]
rs4609034	0.85[AMR][1000 genomes]
rs4712113	0.89[JPT][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs4715585	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4715588	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4715589	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4715591	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs4715592	0.89[ASN][1000 genomes]
rs4715593	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4715597	0.92[JPT][hapmap]
rs6459128	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6459129	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6459133	0.92[CHB][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6459134	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6459136	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6904431	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6904899	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6908195	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6909268	0.90[JPT][hapmap]
rs6911907	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914495	0.92[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914892	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917593	0.83[ASN][1000 genomes]
rs6922057	0.83[ASN][1000 genomes]
rs6927421	0.85[AMR][1000 genomes]
rs6927919	0.92[JPT][hapmap]
rs6933151	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6934945	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6935152	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6935200	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6939465	0.92[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6939632	0.89[ASN][1000 genomes]
rs7450147	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7754787	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7762422	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7774374	0.84[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9296828	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs9296830	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs9357891	0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9357892	0.81[ASN][1000 genomes]
rs9357894	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9370485	0.83[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9370486	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382583	0.92[JPT][hapmap]
rs9382592	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9382595	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9396176	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9396181	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9464348	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9475593	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9475621	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs994667	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56096600-56105400	Weak transcription	Psoas Muscle	Psoas
3	chr6:56097800-56105400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:56098000-56106200	Weak transcription	Fetal Lung	lung
5	chr6:56099400-56100400	Enhancers	Fetal Stomach	stomach
6	chr6:56099400-56100400	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:56099400-56101800	Enhancers	Colon Smooth Muscle	Colon
8	chr6:56099600-56100200	Enhancers	Right Atrium	heart
9	chr6:56099600-56100400	Enhancers	Brain Anterior Caudate	brain
10	chr6:56099800-56100400	Enhancers	A549	lung
11	chr6:56099800-56100600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:56099800-56100600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:56099800-56100600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:56100000-56100200	Enhancers	Osteobl	bone
15	chr6:56100000-56100400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:56100000-56100400	Enhancers	NHDF-Ad	bronchial
17	chr6:56100000-56100600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:56100000-56100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:56100000-56100600	Enhancers	Fetal Heart	heart
20	chr6:56100000-56101200	Weak transcription	Esophagus	oesophagus
21	chr6:56100000-56101200	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:56100000-56103400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:56100000-56105400	Weak transcription	Aorta	Aorta

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