Variant report

Variant	rs1925153
Chromosome Location	chr6:56102780-56102781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56101839..56104063-chr6:56109870..56113692,3	MCF-7	breast:
2	chr6:56098481..56101054-chr6:56102369..56105137,2	K562	blood:

Variant related genes	Relation type
ENSG00000124749	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11970688	0.83[AFR][1000 genomes]
rs12190324	0.86[AFR][1000 genomes]
rs13193925	0.81[YRI][hapmap]
rs13209836	0.95[YRI][hapmap]
rs1320996	0.96[AFR][1000 genomes]
rs13218367	0.83[CEU][hapmap]
rs1474698	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs1925144	0.86[AFR][1000 genomes]
rs1925148	0.96[AFR][1000 genomes]
rs1925174	0.84[YRI][hapmap]
rs1998700	0.88[YRI][hapmap]
rs2038150	0.81[YRI][hapmap]
rs2223598	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs3846922	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs3846924	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs3846925	0.88[AFR][1000 genomes]
rs3846926	0.96[AFR][1000 genomes]
rs3899394	0.87[AFR][1000 genomes]
rs4126555	0.86[AFR][1000 genomes]
rs4126556	0.86[AFR][1000 genomes]
rs4126557	0.86[AFR][1000 genomes]
rs4126558	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs4140575	0.96[AFR][1000 genomes]
rs4310058	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4712116	0.85[AFR][1000 genomes]
rs4715583	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs4715584	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs4715596	0.96[AFR][1000 genomes]
rs6459130	0.87[AFR][1000 genomes]
rs6904431	0.86[AFR][1000 genomes]
rs6920461	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs6935200	0.83[AFR][1000 genomes]
rs6936386	0.87[AFR][1000 genomes]
rs764517	0.81[AFR][1000 genomes]
rs7741903	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7762422	0.85[AFR][1000 genomes]
rs7767486	0.84[CEU][hapmap]
rs7776118	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs9296832	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9296833	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9349804	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9357893	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs9357897	0.92[AFR][1000 genomes]
rs9382595	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs9396171	0.83[CEU][hapmap]
rs9396176	0.95[YRI][hapmap]
rs9396181	0.83[AFR][1000 genomes]
rs9396183	0.96[AFR][1000 genomes]
rs9475583	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs9475586	0.83[AFR][1000 genomes]
rs9475641	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56096600-56105400	Weak transcription	Psoas Muscle	Psoas
3	chr6:56097800-56105400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:56098000-56106200	Weak transcription	Fetal Lung	lung
5	chr6:56100000-56103400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:56100000-56105400	Weak transcription	Aorta	Aorta
7	chr6:56100200-56111600	Weak transcription	Right Atrium	heart
8	chr6:56100400-56105600	Weak transcription	Fetal Stomach	stomach
9	chr6:56100400-56107400	Weak transcription	A549	lung
10	chr6:56100600-56103200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:56100600-56109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:56101000-56105000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:56101000-56105600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:56101200-56103400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:56101400-56103200	Weak transcription	Esophagus	oesophagus
16	chr6:56101800-56102800	Weak transcription	Colon Smooth Muscle	Colon

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