Variant report

Variant	rs1925157
Chromosome Location	chr6:56108853-56108854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56105700..56109003-chr6:56111761..56115485,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124749	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12528835	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1925164	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs2397214	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs3857613	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7769092	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7772840	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56100200-56111600	Weak transcription	Right Atrium	heart
2	chr6:56100600-56109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:56103600-56111600	Weak transcription	Left Ventricle	heart
4	chr6:56104200-56110400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:56104800-56109000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:56106000-56111400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:56106200-56109000	Enhancers	Liver	Liver
8	chr6:56106200-56110000	Enhancers	Fetal Lung	lung
9	chr6:56106200-56110200	Weak transcription	Fetal Stomach	stomach
10	chr6:56106200-56111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:56106200-56111600	Weak transcription	Ovary	ovary
12	chr6:56106400-56109800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:56106400-56111600	Weak transcription	Psoas Muscle	Psoas
14	chr6:56106600-56110400	Weak transcription	HSMMtube	muscle
15	chr6:56106600-56111000	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:56106600-56111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:56106600-56112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:56107000-56111400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:56107200-56111200	Enhancers	Colon Smooth Muscle	Colon
20	chr6:56107400-56109000	Weak transcription	NHEK	skin
21	chr6:56107400-56109600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:56107400-56109600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:56107400-56110400	Weak transcription	Fetal Kidney	kidney
24	chr6:56107400-56111800	Weak transcription	HMEC	breast
25	chr6:56107600-56109000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:56107800-56110000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:56108000-56109200	Enhancers	Fetal Muscle Leg	muscle
28	chr6:56108000-56109200	Enhancers	Stomach Smooth Muscle	stomach
29	chr6:56108000-56109600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:56108200-56111600	Weak transcription	A549	lung
31	chr6:56108400-56109000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:56108400-56109000	Enhancers	NHLF	lung
33	chr6:56108400-56109200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:56108400-56110000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:56108400-56110400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:56108400-56111400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:56108600-56109000	Active TSS	Aorta	Aorta
38	chr6:56108600-56109000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr6:56108600-56111400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:56108800-56109000	Enhancers	Primary B cells from cord blood	blood
41	chr6:56108800-56109200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:56108800-56109200	Enhancers	Brain Cingulate Gyrus	brain
43	chr6:56108800-56110600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr6:56108800-56110800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:56108800-56111000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:56108800-56111200	Enhancers	Rectal Smooth Muscle	rectum

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