Variant report

Variant	rs192734606
Chromosome Location	chr7:104525517-104525518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104523003..104525584-chr7:105230453..105233041,2	K562	blood:
2	chr7:104523014..104525633-chr7:104652582..104654103,2	MCF-7	breast:
3	chr7:104523347..104526293-chr7:104526937..104529454,4	K562	blood:
4	chr7:104523942..104525943-chr7:104535712..104537774,2	K562	blood:
5	chr7:104524458..104526068-chr7:104657025..104659232,2	K562	blood:

Variant related genes	Relation type
ENSG00000185055	Chromatin interaction
ENSG00000228393	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv981792	chr7:104524351-104538104	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104523800-104526600	Enhancers	Fetal Muscle Leg	muscle
2	chr7:104524200-104531800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:104524400-104525800	ZNF genes & repeats	GM12878-XiMat	blood
4	chr7:104524600-104531800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:104524600-104532200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:104524800-104525600	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:104524800-104525600	Enhancers	Fetal Intestine Large	intestine
8	chr7:104524800-104526000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:104524800-104527000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:104524800-104527400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:104524800-104530600	Weak transcription	Right Atrium	heart
12	chr7:104524800-104534600	Weak transcription	Fetal Kidney	kidney
13	chr7:104524800-104535200	Weak transcription	Colonic Mucosa	Colon
14	chr7:104524800-104540800	Weak transcription	Brain Anterior Caudate	brain
15	chr7:104525000-104525600	Genic enhancers	Fetal Intestine Small	intestine
16	chr7:104525000-104527800	Weak transcription	Fetal Heart	heart
17	chr7:104525000-104527800	Weak transcription	Fetal Stomach	stomach
18	chr7:104525000-104531200	Weak transcription	Pancreas	Pancrea
19	chr7:104525400-104527400	Weak transcription	Fetal Lung	lung
20	chr7:104525400-104534600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:104525400-104540400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links