Variant report

Variant	rs1927808
Chromosome Location	chr13:96873444-96873445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1072563	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12428610	0.85[EUR][1000 genomes]
rs1327634	0.83[EUR][1000 genomes]
rs16953068	0.88[ASN][1000 genomes]
rs1925115	0.87[ASN][1000 genomes]
rs1925122	0.89[ASN][1000 genomes]
rs1927790	0.92[ASN][1000 genomes]
rs1927804	0.81[AMR][1000 genomes]
rs1927805	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927807	0.85[EUR][1000 genomes]
rs1927809	0.85[EUR][1000 genomes]
rs1930219	0.81[AMR][1000 genomes]
rs1930223	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2149316	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2149317	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149318	0.85[EUR][1000 genomes]
rs2182987	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2182988	0.82[EUR][1000 genomes]
rs2389629	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4771932	0.88[ASN][1000 genomes]
rs4773942	0.82[EUR][1000 genomes]
rs4773944	0.83[EUR][1000 genomes]
rs61966875	0.90[ASN][1000 genomes]
rs6491285	0.88[ASN][1000 genomes]
rs6492835	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6492840	0.81[EUR][1000 genomes]
rs7320065	0.90[ASN][1000 genomes]
rs7322776	0.82[EUR][1000 genomes]
rs7323056	0.86[ASN][1000 genomes]
rs7323137	0.82[EUR][1000 genomes]
rs7324113	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7325654	0.82[EUR][1000 genomes]
rs7328389	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7329425	0.82[EUR][1000 genomes]
rs7337506	0.90[ASN][1000 genomes]
rs748457	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7981845	0.90[ASN][1000 genomes]
rs7981931	0.92[ASN][1000 genomes]
rs7984912	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7985299	0.81[EUR][1000 genomes]
rs7987510	0.81[AMR][1000 genomes]
rs7987636	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7992274	0.81[EUR][1000 genomes]
rs7995922	0.82[AMR][1000 genomes]
rs7997409	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8002865	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9302095	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9302096	0.82[EUR][1000 genomes]
rs9302097	0.84[EUR][1000 genomes]
rs9302098	0.84[EUR][1000 genomes]
rs943560	0.82[EUR][1000 genomes]
rs9516642	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516648	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9516649	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516651	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9516653	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9525150	0.82[EUR][1000 genomes]
rs9525154	0.82[EUR][1000 genomes]
rs9525156	0.84[EUR][1000 genomes]
rs9525158	0.82[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs9525166	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9525169	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9525171	0.81[AMR][1000 genomes]
rs9554333	0.92[ASN][1000 genomes]
rs9556550	0.84[ASN][1000 genomes]
rs9556551	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9556554	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9556555	0.87[ASN][1000 genomes]
rs9562045	0.81[EUR][1000 genomes]
rs9562050	0.81[EUR][1000 genomes]
rs9562060	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1927808	ABCC4	cis	lymphoblastoid	seeQTL
rs1927808	CLDN10	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96868200-96873800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:96870800-96876200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr13:96871400-96875000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr13:96871600-96876600	Enhancers	Monocytes-CD14+_RO01746	blood

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