Variant report

Variant	rs1929458
Chromosome Location	chr2:77125218-77125219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10172981	0.81[CEU][hapmap]
rs10184480	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10520174	0.93[TSI][hapmap]
rs10520177	0.81[TSI][hapmap]
rs10520179	0.81[TSI][hapmap]
rs11901979	0.81[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs1319244	0.81[CEU][hapmap]
rs17013635	0.81[TSI][hapmap]
rs17333404	0.81[CEU][hapmap]
rs17333578	0.89[EUR][1000 genomes]
rs17333696	0.84[EUR][1000 genomes]
rs17333850	0.84[EUR][1000 genomes]
rs17333884	0.93[TSI][hapmap]
rs17334205	0.81[TSI][hapmap]
rs17334527	0.81[TSI][hapmap]
rs17405288	0.81[GIH][hapmap]
rs17405433	0.81[CEU][hapmap];0.81[GIH][hapmap];0.96[TSI][hapmap]
rs17405440	0.81[CEU][hapmap]
rs17405711	0.93[TSI][hapmap]
rs17405724	0.85[EUR][1000 genomes]
rs17406009	0.81[TSI][hapmap]
rs17406084	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs17406465	0.81[TSI][hapmap]
rs1929454	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs1929455	0.80[CEU][hapmap]
rs1929456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1929457	0.81[CEU][hapmap]
rs2065375	0.81[TSI][hapmap]
rs34007251	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4853281	0.87[CEU][hapmap]
rs4853285	0.93[TSI][hapmap]
rs62170328	0.88[EUR][1000 genomes]
rs62170329	0.88[EUR][1000 genomes]
rs62170330	0.90[EUR][1000 genomes]
rs62170331	0.89[EUR][1000 genomes]
rs62170332	0.89[EUR][1000 genomes]
rs62170336	0.85[EUR][1000 genomes]
rs62170337	0.84[EUR][1000 genomes]
rs62170339	0.84[EUR][1000 genomes]
rs6743766	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72823112	0.80[EUR][1000 genomes]
rs7425906	0.85[CEU][hapmap]
rs953854	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs953855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985751	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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