Variant report

Variant	rs1932060
Chromosome Location	chr1:71185223-71185224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1414069	0.93[AMR][1000 genomes]
rs1591385	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2782785	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2782792	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782793	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782794	0.82[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782795	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2820518	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3131374	1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71182600-71186000	Enhancers	Colon Smooth Muscle	Colon
2	chr1:71182600-71186800	Enhancers	Ovary	ovary
3	chr1:71183400-71186000	Enhancers	Fetal Stomach	stomach
4	chr1:71183600-71185400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:71183800-71185800	Enhancers	Fetal Lung	lung
6	chr1:71184000-71186800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:71184000-71193000	Weak transcription	Aorta	Aorta
8	chr1:71184200-71185600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:71185200-71186200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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