Variant report

Variant	rs1932061
Chromosome Location	chr1:71150855-71150856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2152125	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2263634	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2782763	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2782764	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2782808	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820529	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2820532	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2992053	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2992054	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71149800-71151400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:71150600-71151000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:71150600-71151000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:71150600-71151200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:71150600-71151200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:71150800-71151600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:71150800-71151600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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