Variant report

Variant	rs193295179
Chromosome Location	chr11:16916676-16916677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16914855..16917197-chr11:16922400..16924904,3	MCF-7	breast:
2	chr11:16914888..16916923-chr11:16925227..16926853,2	MCF-7	breast:
3	chr11:16915696..16917926-chr11:16944462..16946191,2	MCF-7	breast:
4	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16910000-16917800	Weak transcription	Lung	lung
2	chr11:16912200-16923600	Weak transcription	A549	lung
3	chr11:16912400-16919400	Weak transcription	Liver	Liver
4	chr11:16913000-16918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:16913400-16916800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
7	chr11:16914000-16917000	Weak transcription	HSMM	muscle
8	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
9	chr11:16914400-16919200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:16914600-16921200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:16915000-16917000	Enhancers	Esophagus	oesophagus
12	chr11:16915400-16918200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:16915400-16918400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:16915600-16916800	Weak transcription	NHDF-Ad	bronchial
15	chr11:16915600-16916800	Weak transcription	Osteobl	bone
16	chr11:16915800-16916800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16915800-16916800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:16915800-16917800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:16915800-16918000	Weak transcription	Right Ventricle	heart
20	chr11:16915800-16919000	Weak transcription	Right Atrium	heart
21	chr11:16915800-16921400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:16915800-16921400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:16915800-16922800	Weak transcription	HMEC	breast
24	chr11:16916000-16917800	Weak transcription	Stomach Mucosa	stomach
25	chr11:16916000-16918400	Weak transcription	Pancreas	Pancrea
26	chr11:16916000-16918800	Weak transcription	Adipose Nuclei	Adipose
27	chr11:16916000-16919000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:16916000-16923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:16916000-16924400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
31	chr11:16916200-16917200	Weak transcription	Gastric	stomach
32	chr11:16916200-16917400	Weak transcription	Left Ventricle	heart
33	chr11:16916400-16917200	Enhancers	Duodenum Mucosa	Duodenum
34	chr11:16916400-16917600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:16916600-16918200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links