Variant report

Variant	rs1933002
Chromosome Location	chr1:220748832-220748833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1073460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10779408	0.88[EUR][1000 genomes]
rs10779409	0.90[EUR][1000 genomes]
rs10779414	0.84[CEU][hapmap]
rs12048541	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12568419	0.80[JPT][hapmap]
rs12753927	0.86[EUR][1000 genomes]
rs12758833	0.90[EUR][1000 genomes]
rs17007855	0.86[EUR][1000 genomes]
rs17007885	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1933008	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2253641	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2378401	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2589578	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2589588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2786607	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786609	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2786613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786617	0.81[MEX][hapmap]
rs2786619	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889928	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2993209	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2994527	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35327085	0.86[EUR][1000 genomes]
rs35553664	0.90[EUR][1000 genomes]
rs3737296	0.94[CEU][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes]
rs3753873	0.82[CEU][hapmap]
rs3806329	0.85[CHD][hapmap]
rs4011894	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4846657	0.94[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs6541155	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes]
rs6677302	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6699189	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs6699196	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs7514431	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes]
rs7532064	0.85[EUR][1000 genomes]
rs9431262	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220742200-220749600	Weak transcription	Aorta	Aorta
2	chr1:220748000-220755600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:220748000-220762200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:220748200-220752400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:220748200-220762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:220748400-220762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:220748600-220749400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:220748600-220750200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:220748600-220751000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links