Variant report

Variant	rs1933758
Chromosome Location	chr6:130887052-130887053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1203354	0.82[ASN][1000 genomes]
rs17059212	0.94[ASN][1000 genomes]
rs1933772	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1933773	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2209147	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62431563	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6903831	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6904870	0.86[EUR][1000 genomes]
rs9375723	0.85[EUR][1000 genomes]
rs9385545	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9385546	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9388799	0.85[EUR][1000 genomes]
rs9402237	0.86[EUR][1000 genomes]
rs9402238	0.87[EUR][1000 genomes]
rs946300	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9492633	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5475	chr6:130880169-130924850	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130882600-130894400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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