Variant report

Variant	rs1934013
Chromosome Location	chr6:74847865-74847866
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12665051	0.80[ASN][1000 genomes]
rs1934021	0.87[ASN][1000 genomes]
rs2486229	0.83[ASN][1000 genomes]
rs28540037	0.82[ASN][1000 genomes]
rs4708121	0.85[ASN][1000 genomes]
rs4708122	0.84[ASN][1000 genomes]
rs4708124	0.84[ASN][1000 genomes]
rs4708125	0.85[ASN][1000 genomes]
rs6921555	0.85[ASN][1000 genomes]
rs9341446	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9343111	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9350522	0.85[ASN][1000 genomes]
rs9350523	0.85[ASN][1000 genomes]
rs9350524	0.84[ASN][1000 genomes]
rs9352063	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352066	0.85[ASN][1000 genomes]
rs9352067	0.85[ASN][1000 genomes]
rs9359059	0.85[ASN][1000 genomes]
rs9359060	0.85[ASN][1000 genomes]
rs9359061	0.85[ASN][1000 genomes]
rs9359062	0.85[ASN][1000 genomes]
rs9360734	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9360735	0.85[ASN][1000 genomes]
rs9360736	0.85[ASN][1000 genomes]
rs9360737	0.85[ASN][1000 genomes]
rs9447153	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv511354	chr6:74828682-74851053	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv603752	chr6:74832524-74852012	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv603753	chr6:74832524-74852508	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74846800-74848000	Enhancers	HUVEC	blood vessel
2	chr6:74847400-74848200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:74847600-74848000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:74847600-74848000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:74847600-74848000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:74847600-74848000	Enhancers	Osteobl	bone
7	chr6:74847600-74848200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:74847600-74848200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:74847600-74848200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:74847600-74848200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:74847600-74848200	Enhancers	HMEC	breast
12	chr6:74847600-74848200	Enhancers	NHDF-Ad	bronchial
13	chr6:74847600-74848200	Enhancers	NHEK	skin
14	chr6:74847800-74848200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:74847800-74848200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:74847800-74848200	Enhancers	Ovary	ovary

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