Variant report

Variant	rs1934153
Chromosome Location	chr1:216919351-216919352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12024199	1.00[CHB][hapmap]
rs12144183	0.86[YRI][hapmap]
rs1339351	1.00[CHB][hapmap]
rs1361334	1.00[CHB][hapmap]
rs1416616	1.00[CHB][hapmap]
rs2789729	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2813696	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2813697	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2813698	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2813701	1.00[CHB][hapmap]
rs2813708	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216916800-216921600	Weak transcription	Fetal Heart	heart
5	chr1:216919000-216922800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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