Variant report

Variant	rs1935166
Chromosome Location	chr10:119132046-119132047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119130955..119133218-chr10:119134123..119136577,2	K562	blood:
2	chr10:119130158..119132080-chr10:119133751..119135929,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1008448	0.85[ASN][1000 genomes]
rs10787770	0.93[ASN][1000 genomes]
rs10886061	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10886062	0.85[ASN][1000 genomes]
rs10886063	0.93[ASN][1000 genomes]
rs10886064	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10886065	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197960	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197968	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197969	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197970	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197974	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197975	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197976	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197977	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197981	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11498892	0.92[ASN][1000 genomes]
rs12243133	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12243628	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12247698	0.93[ASN][1000 genomes]
rs12256994	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12263512	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12269460	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12413507	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414644	0.83[ASN][1000 genomes]
rs12569963	0.85[ASN][1000 genomes]
rs12571779	0.83[ASN][1000 genomes]
rs12573009	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468563	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs181440	0.86[ASN][1000 genomes]
rs1860407	0.82[ASN][1000 genomes]
rs1935167	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1935168	0.93[ASN][1000 genomes]
rs1954212	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1954213	0.88[ASN][1000 genomes]
rs2052075	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2096112	0.85[ASN][1000 genomes]
rs2153714	0.80[ASN][1000 genomes]
rs2244249	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2244375	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2255062	0.83[ASN][1000 genomes]
rs2255367	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275670	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275671	0.91[ASN][1000 genomes]
rs2420457	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2429505	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2429508	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2487692	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2490626	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2490631	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532781	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532782	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532783	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532784	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532785	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532786	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532787	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532788	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532789	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532792	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532793	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532795	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532796	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532813	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532815	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532817	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532834	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532835	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532836	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532838	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532839	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532841	0.85[ASN][1000 genomes]
rs2532842	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532844	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794414	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2794416	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2794418	0.85[ASN][1000 genomes]
rs2794419	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794421	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2794435	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794436	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803799	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803801	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803802	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803803	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2803804	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2803807	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803809	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2803810	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2803816	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2901123	0.85[ASN][1000 genomes]
rs34247425	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3523	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363235	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363236	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363240	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs363242	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs363243	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs363275	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs363276	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363278	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363282	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3814229	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814230	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4751623	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4752054	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585431	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7070594	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7072027	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072785	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7086651	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7087395	0.93[ASN][1000 genomes]
rs7088401	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825530	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7897828	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898092	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7900191	0.89[ASN][1000 genomes]
rs7901203	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902237	0.89[ASN][1000 genomes]
rs887341	0.85[ASN][1000 genomes]
rs979992	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1935166	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119112600-119132800	Weak transcription	Gastric	stomach
2	chr10:119120000-119132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:119126800-119132800	Weak transcription	Lung	lung
4	chr10:119127400-119132800	Weak transcription	Fetal Thymus	thymus
5	chr10:119128600-119133000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:119128800-119133200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:119128800-119133200	Weak transcription	Placenta	Placenta
8	chr10:119129000-119132200	Enhancers	Fetal Brain Male	brain
9	chr10:119129000-119132800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:119129200-119132600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr10:119129200-119133200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:119129400-119132200	Weak transcription	Thymus	Thymus
13	chr10:119129600-119133400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:119129800-119132400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr10:119130000-119132200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:119130000-119132200	Enhancers	Adipose Nuclei	Adipose
17	chr10:119130000-119132200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:119130000-119132600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:119130000-119132800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:119130200-119132200	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr10:119130200-119132800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:119130200-119132800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:119130200-119135600	Active TSS	Fetal Intestine Large	intestine
24	chr10:119130400-119132600	Active TSS	Primary B cells from cord blood	blood
25	chr10:119130400-119132800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:119130400-119132800	Enhancers	Fetal Lung	lung
27	chr10:119130600-119132200	Active TSS	Rectal Smooth Muscle	rectum
28	chr10:119130600-119132200	Weak transcription	Stomach Mucosa	stomach
29	chr10:119130600-119133400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:119130800-119132600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:119131000-119132200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:119131000-119132200	Enhancers	Colon Smooth Muscle	Colon
33	chr10:119131000-119132400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:119131000-119132600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:119131000-119133200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:119131200-119132200	Weak transcription	Aorta	Aorta
37	chr10:119131200-119132200	Enhancers	Fetal Heart	heart
38	chr10:119131200-119132200	Enhancers	Fetal Stomach	stomach
39	chr10:119131200-119132800	Weak transcription	Esophagus	oesophagus
40	chr10:119131200-119133400	Active TSS	Colonic Mucosa	Colon
41	chr10:119131200-119133400	Weak transcription	Spleen	Spleen
42	chr10:119131200-119135600	Active TSS	K562	blood
43	chr10:119131400-119132200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:119131400-119132200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:119131400-119132200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:119131400-119132200	Enhancers	Brain Hippocampus Middle	brain
47	chr10:119131400-119132200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr10:119131400-119132200	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:119131400-119132200	Enhancers	Psoas Muscle	Psoas
50	chr10:119131400-119132400	Enhancers	Primary T cells from cord blood	blood

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