Variant report

Variant	rs1936635
Chromosome Location	chr1:225090870-225090871
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224690531..224692939-chr1:225090121..225091739,2	K562	blood:

Extended variants
information (count: 122 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10158926	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10495228	0.91[CHB][hapmap];0.96[CHD][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs10495229	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1080260	0.86[ASN][1000 genomes]
rs1110378	0.99[ASN][1000 genomes]
rs12561993	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs12563434	0.95[EUR][1000 genomes]
rs12563857	0.82[CHB][hapmap];0.93[CHD][hapmap];0.88[YRI][hapmap]
rs12564683	0.84[ASN][1000 genomes]
rs12565019	0.85[ASN][1000 genomes]
rs12565439	0.82[CHB][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs12566396	0.81[ASN][1000 genomes]
rs12566857	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs12566886	0.81[ASN][1000 genomes]
rs12567091	0.81[CHB][hapmap];0.88[YRI][hapmap]
rs12567461	0.85[ASN][1000 genomes]
rs12567470	0.85[ASN][1000 genomes]
rs12567499	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs1482279	0.82[CHB][hapmap]
rs1482280	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs1506069	0.81[JPT][hapmap]
rs1506070	0.82[CHB][hapmap];0.93[CHD][hapmap];0.88[YRI][hapmap]
rs1506071	0.81[JPT][hapmap]
rs1506072	0.92[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1600865	0.84[ASN][1000 genomes]
rs16857787	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16858145	0.85[ASN][1000 genomes]
rs16858216	0.85[ASN][1000 genomes]
rs16858299	0.84[ASN][1000 genomes]
rs16858661	0.82[CHB][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs16858758	0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[LWK][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs16858766	0.81[ASN][1000 genomes]
rs16858829	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs16858831	0.82[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs16858932	0.82[CHB][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs16858962	0.82[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs1905114	0.82[CHB][hapmap]
rs1905115	0.88[YRI][hapmap]
rs1936629	0.84[ASN][1000 genomes]
rs1936631	0.99[ASN][1000 genomes]
rs1961688	0.81[CHB][hapmap];0.88[YRI][hapmap]
rs1982707	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs2101143	0.85[ASN][1000 genomes]
rs2128268	0.81[JPT][hapmap]
rs2128270	0.92[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap]
rs2254158	0.93[EUR][1000 genomes]
rs2254406	0.95[EUR][1000 genomes]
rs2291227	0.81[JPT][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs2298257	1.00[YRI][hapmap]
rs2406097	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2406098	0.83[ASN][1000 genomes]
rs2449256	0.81[JPT][hapmap]
rs2449259	0.82[CHB][hapmap];0.93[CHD][hapmap]
rs2449269	0.99[ASN][1000 genomes]
rs2449273	0.81[CHB][hapmap]
rs2449274	0.82[CHB][hapmap]
rs2449276	0.82[CHB][hapmap]
rs2449292	0.82[CHB][hapmap];0.93[CHD][hapmap]
rs2449311	0.82[CHB][hapmap];0.93[CHD][hapmap]
rs2449313	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs2449315	0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2449316	0.81[ASN][1000 genomes]
rs2449320	0.88[ASN][1000 genomes]
rs2456335	0.82[CHB][hapmap]
rs2456336	0.81[JPT][hapmap]
rs2456339	0.82[CHB][hapmap]
rs2456349	0.81[JPT][hapmap]
rs2489296	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489300	0.81[ASN][1000 genomes]
rs2489302	0.80[ASN][1000 genomes]
rs2489303	0.89[ASN][1000 genomes]
rs2489310	0.84[ASN][1000 genomes]
rs2489311	0.99[ASN][1000 genomes]
rs2489313	0.99[ASN][1000 genomes]
rs2489322	0.82[CHB][hapmap]
rs2489324	0.92[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2489327	0.81[JPT][hapmap]
rs2489337	0.81[JPT][hapmap]
rs2489346	0.81[JPT][hapmap]
rs2489348	0.81[JPT][hapmap]
rs2489352	0.81[JPT][hapmap]
rs2501061	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs2501064	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs2501066	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs2501072	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs2501078	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs2501081	0.85[ASN][1000 genomes]
rs2501082	0.99[ASN][1000 genomes]
rs2501083	0.99[ASN][1000 genomes]
rs2501085	0.99[ASN][1000 genomes]
rs2501087	0.97[ASN][1000 genomes]
rs2501099	0.96[EUR][1000 genomes]
rs2501120	0.85[ASN][1000 genomes]
rs2501129	0.82[CHB][hapmap]
rs2501130	0.82[CHB][hapmap];0.93[CHD][hapmap]
rs2501135	0.81[CHB][hapmap]
rs2501140	0.81[ASN][1000 genomes]
rs2501141	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs2501147	0.89[ASN][1000 genomes]
rs2501151	0.89[ASN][1000 genomes]
rs2501153	0.81[ASN][1000 genomes]
rs2501156	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs2939363	0.81[JPT][hapmap]
rs3101908	0.82[CHB][hapmap];0.93[CHD][hapmap]
rs4379650	0.81[ASN][1000 genomes]
rs55668169	0.81[ASN][1000 genomes]
rs55754430	0.85[ASN][1000 genomes]
rs56088704	0.81[ASN][1000 genomes]
rs56152573	0.81[ASN][1000 genomes]
rs56203783	0.83[ASN][1000 genomes]
rs57137890	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59420435	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61466304	0.85[ASN][1000 genomes]
rs6426163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6697156	0.82[CHB][hapmap];0.88[YRI][hapmap]
rs72629701	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729398	0.85[ASN][1000 genomes]
rs7523949	0.82[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs7531542	1.00[CHB][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1936635	TMEM63A	cis	cerebellum	SCAN
rs1936635	NVL	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225090000-225091400	Weak transcription	Fetal Thymus	thymus

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