Variant report
| Variant | rs1936915 |
|---|---|
| Chromosome Location | chrX:74648816-74648817 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:74643612..74646564-chrX:74648573..74650200,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1010616 | 0.93[CEU][hapmap] |
| rs11796028 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs11796750 | 0.88[CEU][hapmap];0.87[CHB][hapmap] |
| rs12832571 | 0.87[CHB][hapmap] |
| rs12839727 | 0.88[CEU][hapmap];0.87[CHB][hapmap] |
| rs1936917 | 0.88[CEU][hapmap];0.87[CHB][hapmap] |
| rs2012661 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2124691 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2124693 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2367174 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2886929 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4892408 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs4892580 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs5937369 | 0.81[CEU][hapmap];0.87[CHB][hapmap] |
| rs5937384 | 0.88[CEU][hapmap];0.87[CHB][hapmap] |
| rs5938060 | 0.87[CHB][hapmap] |
| rs5938075 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs5938116 | 0.88[CEU][hapmap];0.87[CHB][hapmap] |
| rs5981861 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs5981875 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs5981886 | 0.86[CEU][hapmap];0.87[CHB][hapmap] |
| rs6607563 | 0.87[CHB][hapmap] |
| rs6647139 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6647730 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6647731 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6647753 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7052314 | 0.81[CEU][hapmap];0.87[CHB][hapmap] |
| rs7878508 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7892016 | 1.00[YRI][hapmap] |
| rs9887743 | 0.81[CEU][hapmap];0.87[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv13841 | chrX:74461978-74657064 | Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv532360 | chrX:74462926-74651249 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv916109 | chrX:74463757-74651249 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:74629200-74652400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chrX:74637200-74651000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chrX:74647400-74651600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
