Variant report

Variant	rs1939496
Chromosome Location	chr11:57049411-57049412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10732882	0.82[ASN][1000 genomes]
rs10792083	0.91[ASN][1000 genomes]
rs10792085	0.90[ASN][1000 genomes]
rs10896596	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896599	0.86[EUR][1000 genomes]
rs10896601	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10896602	0.90[ASN][1000 genomes]
rs10896609	0.81[ASN][1000 genomes]
rs11228971	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11228988	0.91[ASN][1000 genomes]
rs11602501	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11604373	0.88[ASN][1000 genomes]
rs17573746	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155231	0.83[EUR][1000 genomes]
rs2511029	0.86[EUR][1000 genomes]
rs2846051	0.87[EUR][1000 genomes]
rs3935069	0.98[ASN][1000 genomes]
rs4939129	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939131	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939134	0.85[ASN][1000 genomes]
rs5012051	0.90[EUR][1000 genomes]
rs522656	0.84[EUR][1000 genomes]
rs55637147	0.82[ASN][1000 genomes]
rs590240	0.85[EUR][1000 genomes]
rs7130020	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928905	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7931298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7936545	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943761	0.91[ASN][1000 genomes]
rs7943915	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7948723	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57045800-57050400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57045800-57050600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:57045800-57051000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:57045800-57051200	Weak transcription	Esophagus	oesophagus
5	chr11:57045800-57054200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:57046000-57051000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:57046000-57062000	Weak transcription	Right Atrium	heart
8	chr11:57046200-57051000	Weak transcription	Small Intestine	intestine
9	chr11:57046200-57051000	Weak transcription	Stomach Mucosa	stomach
10	chr11:57046400-57050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:57046600-57050400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:57046600-57050400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:57046600-57050400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:57046600-57050600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:57046600-57056000	Weak transcription	Adipose Nuclei	Adipose
16	chr11:57046800-57050600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:57046800-57051000	Weak transcription	HSMMtube	muscle
18	chr11:57046800-57051400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:57047000-57051000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:57047600-57051200	Weak transcription	Hela-S3	cervix
21	chr11:57048000-57050400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:57048000-57051200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:57048000-57051200	Weak transcription	Fetal Intestine Large	intestine
24	chr11:57048200-57050600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:57048200-57050800	Weak transcription	Osteobl	bone
26	chr11:57048200-57051200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:57048200-57051200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:57048200-57051200	Weak transcription	HSMM	muscle
29	chr11:57048200-57051400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:57048200-57055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:57048200-57055600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:57048200-57056400	Weak transcription	Gastric	stomach
33	chr11:57048400-57050400	Weak transcription	NHDF-Ad	bronchial
34	chr11:57048400-57050600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:57048400-57051000	Weak transcription	HMEC	breast
36	chr11:57048400-57051400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:57049000-57050200	Weak transcription	Placenta	Placenta
38	chr11:57049400-57050600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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