Variant report
| Variant | rs1939566 |
|---|---|
| Chromosome Location | chr11:93376973-93376974 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10741468 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10765630 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10765632 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10831087 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2434983 | 1.00[EUR][1000 genomes] |
| rs2508574 | 1.00[EUR][1000 genomes] |
| rs4284369 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4595504 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs584474 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs592526 | 1.00[EUR][1000 genomes] |
| rs604414 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs607826 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs614003 | 1.00[EUR][1000 genomes] |
| rs622231 | 1.00[EUR][1000 genomes] |
| rs624883 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6483257 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6483263 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs653934 | 1.00[EUR][1000 genomes] |
| rs655208 | 1.00[EUR][1000 genomes] |
| rs657177 | 1.00[EUR][1000 genomes] |
| rs666470 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs669937 | 1.00[EUR][1000 genomes] |
| rs683660 | 1.00[EUR][1000 genomes] |
| rs694307 | 1.00[EUR][1000 genomes] |
| rs7123801 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7927030 | 0.86[AFR][1000 genomes] |
| rs7939434 | 1.00[EUR][1000 genomes] |
| rs7940598 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898181 | chr11:93072843-93662459 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 2 | nsv975401 | chr11:93364502-93390549 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93376600-93377200 | Active TSS | Lung | lung |
