Variant report

Variant	rs1944101
Chromosome Location	chr11:93402096-93402097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93399268..93402269-chr11:93471854..93474833,3	K562	blood:
2	chr11:93399268..93402269-chr11:93473059..93476035,6	K562	blood:
3	chr11:93394628..93397183-chr11:93397951..93402212,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182919	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000166004	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1011993	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10734163	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741470	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741472	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741473	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765621	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765622	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765624	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765625	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10765626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10765627	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765629	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765631	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831086	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10831088	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831092	0.82[AMR][1000 genomes]
rs11020471	1.00[CEU][hapmap]
rs11020477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs11822965	1.00[CEU][hapmap]
rs12275974	1.00[CEU][hapmap]
rs12277621	0.92[ASN][1000 genomes]
rs12278291	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs12279657	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12293939	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs1784203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1944099	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944102	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944103	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944105	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1944106	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1954994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155245	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2155246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155248	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2186686	1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288505	1.00[CHB][hapmap]
rs2298706	1.00[CHB][hapmap]
rs2298707	1.00[CHB][hapmap]
rs2434986	0.85[ASN][1000 genomes]
rs2509840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3737461	1.00[CHB][hapmap]
rs3802770	1.00[CHB][hapmap]
rs3802771	1.00[CHB][hapmap]
rs3802773	1.00[CHB][hapmap]
rs3802774	1.00[CHB][hapmap]
rs3802775	1.00[CHB][hapmap]
rs3819173	1.00[CHB][hapmap]
rs4237560	1.00[EUR][1000 genomes]
rs4303195	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4303196	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4753095	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753096	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753097	1.00[CHB][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753098	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753101	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4753488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753489	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753490	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753491	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753492	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4753493	0.83[AFR][1000 genomes]
rs4753495	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58454195	0.85[ASN][1000 genomes]
rs586655	0.82[AMR][1000 genomes]
rs60224981	0.92[ASN][1000 genomes]
rs60410024	0.92[ASN][1000 genomes]
rs61918554	0.92[ASN][1000 genomes]
rs623510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs628916	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs630648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs631116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs642984	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs643924	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs648162	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs655279	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101779	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs7121150	1.00[EUR][1000 genomes]
rs7127033	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130267	0.92[ASN][1000 genomes]
rs7926876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930519	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs7937523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939834	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939847	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs7940153	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952443	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1944101	LOC374421	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395400-93404000	Weak transcription	Esophagus	oesophagus
2	chr11:93395400-93406400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:93395400-93406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:93395400-93406800	Weak transcription	Lung	lung
5	chr11:93395400-93412200	Weak transcription	Gastric	stomach
6	chr11:93395400-93412200	Weak transcription	Pancreas	Pancrea
7	chr11:93395400-93417800	Weak transcription	Small Intestine	intestine
8	chr11:93395600-93402200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:93395600-93403800	Weak transcription	Left Ventricle	heart
10	chr11:93395600-93403800	Weak transcription	Ovary	ovary
11	chr11:93395600-93404000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:93395600-93404200	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:93395600-93408200	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:93395600-93411800	Weak transcription	Aorta	Aorta
15	chr11:93395600-93412200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:93395600-93412400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:93395600-93412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:93395600-93412600	Weak transcription	Colonic Mucosa	Colon
19	chr11:93395600-93417400	Weak transcription	Stomach Mucosa	stomach
20	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:93395800-93411800	Weak transcription	HSMMtube	muscle
22	chr11:93395800-93412200	Weak transcription	Thymus	Thymus
23	chr11:93395800-93413200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:93395800-93413400	Weak transcription	Right Ventricle	heart
25	chr11:93395800-93415800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:93396200-93404600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:93396200-93411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:93396400-93402200	Weak transcription	Primary T cells from cord blood	blood
29	chr11:93396400-93402400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:93396400-93403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:93396400-93404000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:93396400-93404000	Weak transcription	Fetal Stomach	stomach
33	chr11:93396400-93406400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:93396400-93410400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:93396400-93412200	Weak transcription	Brain Angular Gyrus	brain
36	chr11:93396400-93417600	Weak transcription	Fetal Heart	heart
37	chr11:93396600-93402200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:93396600-93402400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:93396600-93403800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:93396600-93403800	Weak transcription	Brain Anterior Caudate	brain
41	chr11:93396600-93407200	Weak transcription	Spleen	Spleen
42	chr11:93396600-93412000	Weak transcription	Psoas Muscle	Psoas
43	chr11:93396600-93413200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:93396600-93417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:93396800-93412600	Weak transcription	A549	lung
46	chr11:93396800-93413200	Weak transcription	NHLF	lung
47	chr11:93396800-93415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr11:93397600-93409600	Strong transcription	K562	blood
50	chr11:93397600-93416400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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